Variant report

Variant	rs561086101
Chromosome Location	chr2:86564037-86564038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86422237..86423747-chr2:86562559..86564958,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-IMMT-3	chr2:86563845-86564188	NONHSAT072099

Variant related genes	Relation type
ENSG00000273080	Chromatin interaction
ENSG00000132305	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	esv3357801	chr2:86563266-86566214	Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3448068	chr2:86563641-86565889	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86562400-86565000	Active TSS	Fetal Brain Female	brain
2	chr2:86563000-86564200	Flanking Active TSS	Colon Smooth Muscle	Colon
3	chr2:86563000-86564200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
4	chr2:86563000-86564200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
5	chr2:86563000-86564200	Flanking Active TSS	Hela-S3	cervix
6	chr2:86563000-86565200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
7	chr2:86563000-86565600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr2:86563200-86564200	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
9	chr2:86563200-86564200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
10	chr2:86563200-86564200	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
11	chr2:86563200-86564400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
12	chr2:86563200-86564400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr2:86563200-86565000	Active TSS	Brain Anterior Caudate	brain
14	chr2:86563400-86564200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr2:86563400-86564200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr2:86563400-86564200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
17	chr2:86563400-86564200	Bivalent Enhancer	Small Intestine	intestine
18	chr2:86563400-86565600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr2:86563400-86565600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
20	chr2:86563600-86564200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:86563600-86564200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr2:86563600-86564200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
23	chr2:86563600-86564200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr2:86563600-86564200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
25	chr2:86563600-86564200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr2:86563600-86564200	Bivalent/Poised TSS	GM12878-XiMat	blood
27	chr2:86563600-86564400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
28	chr2:86563600-86564400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
29	chr2:86563600-86564400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
30	chr2:86563600-86564400	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:86563600-86564400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr2:86563600-86564400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
33	chr2:86563600-86565200	Active TSS	Right Atrium	heart
34	chr2:86563600-86565200	Bivalent/Poised TSS	HSMM	muscle
35	chr2:86563600-86565400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
36	chr2:86563600-86565600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
37	chr2:86563600-86565600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
38	chr2:86563600-86565600	Active TSS	Pancreatic Islets	Pancreatic Islet
39	chr2:86563800-86564200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
41	chr2:86563800-86564200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
42	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
43	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr2:86563800-86564200	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
48	chr2:86563800-86564200	Active TSS	Fetal Heart	heart
49	chr2:86563800-86564200	Bivalent/Poised TSS	Fetal Kidney	kidney
50	chr2:86563800-86564200	Flanking Bivalent TSS/Enh	Fetal Lung	lung

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