Variant report

Variant	rs561086240
Chromosome Location	chr18:9121347-9121348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr18:9102673..9105307-chr18:9120129..9121926,2	MCF-7	breast:
2	chr18:9115871..9117549-chr18:9120095..9121840,2	MCF-7	breast:
3	chr18:9121338..9123244-chr18:9131566..9133474,2	MCF-7	breast:
4	chr18:9121016..9123178-chr18:9135451..9137656,3	MCF-7	breast:
5	chr18:9118013..9119695-chr18:9119782..9122411,2	MCF-7	breast:
6	chr18:9115568..9117749-chr18:9121152..9124030,3	MCF-7	breast:
7	chr18:9120335..9122312-chr18:9122344..9126216,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PPP4R1-4	chr18:9121275-9121454	ENSG00000266053.1

No data

Variant related genes	Relation type
ENSG00000266053	Chromatin interaction
ENSG00000265257	Chromatin interaction
ENSG00000101745	Chromatin interaction
ENSG00000263847	Chromatin interaction
ENSG00000178127	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv909364	chr18:9114096-9186684	Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv543641	chr18:9120450-9181498	Genic enhancers Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9104400-9130000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr18:9106200-9123200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr18:9107000-9135200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr18:9107400-9135400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:9107600-9123200	Weak transcription	Thymus	Thymus
6	chr18:9107800-9134600	Weak transcription	Fetal Brain Male	brain
7	chr18:9108200-9123000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:9108200-9127200	Weak transcription	Fetal Brain Female	brain
9	chr18:9109600-9123200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr18:9111200-9125400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:9111600-9126800	Weak transcription	Colonic Mucosa	Colon
12	chr18:9111800-9123400	Weak transcription	Fetal Stomach	stomach
13	chr18:9114000-9123200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr18:9114000-9123400	Weak transcription	Fetal Intestine Small	intestine
15	chr18:9114000-9127400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr18:9114000-9130800	Weak transcription	Ovary	ovary
17	chr18:9115400-9134600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr18:9115800-9134800	Strong transcription	Dnd41	blood
19	chr18:9116800-9135200	Strong transcription	Fetal Thymus	thymus
20	chr18:9117200-9134800	Weak transcription	Brain Germinal Matrix	brain
21	chr18:9117400-9123400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:9117400-9125800	Weak transcription	Right Atrium	heart
23	chr18:9117400-9132000	Strong transcription	Fetal Intestine Large	intestine
24	chr18:9117400-9135200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr18:9117400-9135600	Weak transcription	Esophagus	oesophagus
26	chr18:9117400-9135800	Weak transcription	Gastric	stomach
27	chr18:9117600-9123400	Weak transcription	Left Ventricle	heart
28	chr18:9117600-9123400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr18:9117600-9127400	Weak transcription	Spleen	Spleen
30	chr18:9117600-9134800	Strong transcription	HUES6 Cell Line	embryonic stem cell
31	chr18:9117600-9135200	Weak transcription	Psoas Muscle	Psoas
32	chr18:9117600-9135800	Weak transcription	Pancreas	Pancrea
33	chr18:9117800-9122400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr18:9117800-9124000	Strong transcription	HepG2	liver
35	chr18:9117800-9127200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr18:9117800-9128800	Weak transcription	Lung	lung
37	chr18:9117800-9132600	Weak transcription	Aorta	Aorta
38	chr18:9117800-9135000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr18:9117800-9135600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr18:9117800-9135800	Weak transcription	Small Intestine	intestine
41	chr18:9118200-9121400	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
42	chr18:9118200-9124400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr18:9118200-9134400	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr18:9118200-9135000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr18:9118400-9121400	Genic enhancers	Liver	Liver
46	chr18:9118400-9134400	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr18:9118600-9121400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr18:9118600-9121600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr18:9118600-9123800	Strong transcription	Fetal Kidney	kidney
50	chr18:9118600-9123800	Strong transcription	Hela-S3	cervix

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