Variant report

Variant	rs561101208
Chromosome Location	chr4:21368284-21368285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013365	chr4:20834054-21609078	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1014062	chr4:21270358-21479027	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv437914	chr4:21292213-21375817	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1005453	chr4:21295066-21454143	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1008816	chr4:21360039-21376839	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv1001250	chr4:21363584-21376839	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv4267	chr4:21364827-21381632	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3467564	chr4:21367454-21373252	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3467565	chr4:21367454-21373252	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3518950	chr4:21367904-21378002	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2649624	chr4:21368198-21377528	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:21364000-21368400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr4:21367200-21368800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr4:21367400-21368600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr4:21367400-21368800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr4:21367600-21368400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr4:21367600-21368600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr4:21367600-21368600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr4:21367800-21368600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:21368000-21368400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:21368000-21368400	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links