Variant report
| Variant | rs56110348 |
|---|---|
| Chromosome Location | chr5:36342180-36342181 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:36303763..36306524-chr5:36340085..36342661,2 | K562 | blood: | |
| 2 | chr5:36335955..36337773-chr5:36340118..36342308,2 | K562 | blood: | |
| 3 | chr5:36238345..36240826-chr5:36342151..36344891,2 | K562 | blood: | |
| 4 | chr5:36341035..36343988-chr5:36345913..36348721,2 | K562 | blood: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-SKP2-4 | chr5:36342155-36342232 | NONHSAT101032 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs13158909 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4869653 | 0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4869655 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4869657 | 0.81[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57271540 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs59272098 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61537490 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6865619 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs72746415 | 0.84[AFR][1000 genomes] |
| rs72746423 | 0.84[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72746424 | 0.84[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs72746429 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881598 | chr5:36248752-36382802 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
