Variant report

Variant	rs561113261
Chromosome Location	chr11:59432078-59432079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59424561..59426606-chr11:59430205..59433871,3	K562	blood:
2	chr11:59426478..59432385-chr11:59434040..59438268,6	K562	blood:
3	chr11:59430323..59433275-chr11:59435459..59437592,2	MCF-7	breast:
4	chr11:59426718..59429219-chr11:59431171..59432816,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166889	Chromatin interaction
ENSG00000255355	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1802782	chr11:59383323-59448068	Genic enhancers Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv819971	chr11:59431720-59434566	Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59395600-59434600	Weak transcription	Stomach Mucosa	stomach
2	chr11:59402200-59432400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:59402200-59434000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:59402600-59434000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:59402600-59434000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:59402600-59434200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr11:59402600-59434400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:59402800-59434200	Strong transcription	Duodenum Mucosa	Duodenum
9	chr11:59402800-59434200	Strong transcription	Fetal Thymus	thymus
10	chr11:59402800-59434400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:59403200-59434600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:59403400-59434400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:59403400-59434400	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:59403600-59434600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:59403800-59433200	Strong transcription	HMEC	breast
16	chr11:59404000-59434600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr11:59404200-59434600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr11:59404200-59434600	Strong transcription	NH-A	brain
19	chr11:59408200-59434400	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr11:59409200-59435400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr11:59412200-59432400	Strong transcription	Fetal Brain Female	brain
22	chr11:59412800-59433400	Strong transcription	NHDF-Ad	bronchial
23	chr11:59413000-59434000	Strong transcription	Hela-S3	cervix
24	chr11:59413400-59434800	Strong transcription	HUES64 Cell Line	embryonic stem cell
25	chr11:59413600-59434800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:59414400-59434400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:59415400-59435400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr11:59416000-59433200	Strong transcription	K562	blood
29	chr11:59424200-59434600	Weak transcription	Fetal Heart	heart
30	chr11:59424600-59432200	Weak transcription	Psoas Muscle	Psoas
31	chr11:59424800-59434400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:59425600-59435000	Weak transcription	Small Intestine	intestine
33	chr11:59425600-59435600	Weak transcription	Aorta	Aorta
34	chr11:59425600-59435600	Weak transcription	Gastric	stomach
35	chr11:59425800-59435000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:59425800-59435400	Weak transcription	Pancreas	Pancrea
37	chr11:59426200-59435400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:59426200-59435400	Weak transcription	Esophagus	oesophagus
39	chr11:59426400-59435000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:59426600-59432200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr11:59426600-59432200	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:59426600-59432200	Weak transcription	HSMMtube	muscle
43	chr11:59426800-59435000	Weak transcription	Right Ventricle	heart
44	chr11:59427000-59432200	Weak transcription	Ovary	ovary
45	chr11:59427000-59432200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr11:59427000-59435400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr11:59428000-59433000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
48	chr11:59428200-59434400	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr11:59428400-59434200	Strong transcription	HSMM	muscle
50	chr11:59428400-59434600	Strong transcription	HUES6 Cell Line	embryonic stem cell

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