Variant report

Variant	rs561115873
Chromosome Location	chr5:107589197-107589198
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534281	chr5:107357579-107674981	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv830441	chr5:107450392-107614557	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882683	chr5:107476501-107769095	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv882684	chr5:107521677-107695558	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv830442	chr5:107539150-107697020	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv882685	chr5:107564746-107695558	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv882686	chr5:107564746-107769095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv4950	chr5:107587778-107637348	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107546600-107590800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr5:107553400-107590800	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr5:107561400-107595000	Weak transcription	Psoas Muscle	Psoas
4	chr5:107575200-107596200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:107575400-107617600	Weak transcription	Primary B cells from cord blood	blood
6	chr5:107575600-107595000	Weak transcription	Right Ventricle	heart
7	chr5:107576800-107595200	Weak transcription	Fetal Intestine Small	intestine
8	chr5:107577000-107616000	Weak transcription	Primary T cells from cord blood	blood
9	chr5:107579800-107589200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:107585000-107617800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:107585400-107591200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr5:107586000-107591400	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr5:107586200-107595000	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr5:107587400-107591000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr5:107587800-107595000	Weak transcription	Liver	Liver
16	chr5:107588200-107589800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:107588400-107589200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr5:107588400-107589200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr5:107588400-107589400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr5:107588400-107589400	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr5:107588400-107589600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:107588800-107589200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:107588800-107594800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:107589000-107590600	Weak transcription	Fetal Heart	heart

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