Variant report

Variant	rs56111655
Chromosome Location	chr14:71487718-71487719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:71487547..71489766-chr14:72170994..72172928,2	MCF-7	breast:
2	chr14:71487162..71488929-chr14:71491873..71493814,2	MCF-7	breast:
3	chr14:71273334..71275325-chr14:71487514..71489742,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100731	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11844851	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28706321	1.00[AMR][1000 genomes]
rs4496061	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56150143	1.00[AMR][1000 genomes]
rs56195946	1.00[AMR][1000 genomes]
rs56709080	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57509106	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59122223	1.00[AMR][1000 genomes]
rs59400895	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59949441	1.00[AMR][1000 genomes]
rs60316971	1.00[AMR][1000 genomes]
rs60473605	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7149960	1.00[AMR][1000 genomes]
rs7155387	1.00[AMR][1000 genomes]
rs7155471	1.00[AMR][1000 genomes]
rs7161431	1.00[AMR][1000 genomes]
rs73289993	1.00[AMR][1000 genomes]
rs73289994	1.00[AMR][1000 genomes]
rs73289999	1.00[AMR][1000 genomes]
rs73290000	1.00[AMR][1000 genomes]
rs73291831	1.00[AMR][1000 genomes]
rs73293803	1.00[AMR][1000 genomes]
rs73293814	1.00[AMR][1000 genomes]
rs73293816	1.00[AMR][1000 genomes]
rs73293828	1.00[AMR][1000 genomes]
rs73295506	1.00[AMR][1000 genomes]
rs73295523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295548	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295552	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73295570	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297518	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297526	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297564	1.00[AMR][1000 genomes]
rs73297566	1.00[AMR][1000 genomes]
rs73297572	1.00[AMR][1000 genomes]
rs73297577	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297587	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297594	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73299437	1.00[AMR][1000 genomes]
rs74060582	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060593	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74061475	1.00[AMR][1000 genomes]
rs8019019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1035416	chr14:71212882-71623271	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv542126	chr14:71212882-71623271	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv1037839	chr14:71263886-71625114	Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv542127	chr14:71263886-71625114	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv1038007	chr14:71269747-71667680	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv1039769	chr14:71310954-71525720	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv542128	chr14:71310954-71525720	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv565043	chr14:71395604-71625112	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
11	nsv1036929	chr14:71469148-71683412	Strong transcription Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71426000-71508800	Weak transcription	Psoas Muscle	Psoas
2	chr14:71438600-71502800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:71439600-71502800	Weak transcription	Small Intestine	intestine
4	chr14:71445200-71496200	Weak transcription	Fetal Brain Male	brain
5	chr14:71445200-71497800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:71445200-71502800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:71445200-71510800	Weak transcription	Colonic Mucosa	Colon
8	chr14:71445400-71498000	Weak transcription	Brain Hippocampus Middle	brain
9	chr14:71445400-71502800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:71455600-71497400	Weak transcription	Right Ventricle	heart
11	chr14:71462600-71497200	Weak transcription	Esophagus	oesophagus
12	chr14:71462800-71497200	Weak transcription	Pancreas	Pancrea
13	chr14:71469600-71506200	Weak transcription	Fetal Heart	heart
14	chr14:71471200-71497800	Weak transcription	Gastric	stomach
15	chr14:71471400-71489000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:71471600-71497200	Weak transcription	Aorta	Aorta
17	chr14:71473000-71489200	Weak transcription	NHLF	lung
18	chr14:71473000-71497800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:71476000-71503200	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr14:71477200-71503600	Strong transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:71478000-71487800	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr14:71480800-71496200	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:71480800-71496800	Weak transcription	Thymus	Thymus
24	chr14:71480800-71497000	Weak transcription	Fetal Stomach	stomach
25	chr14:71480800-71497600	Weak transcription	Fetal Brain Female	brain
26	chr14:71480800-71498000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr14:71481000-71488000	Weak transcription	HUVEC	blood vessel
28	chr14:71481000-71488200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr14:71481000-71497800	Weak transcription	Brain Angular Gyrus	brain
30	chr14:71481000-71498000	Weak transcription	Brain Anterior Caudate	brain
31	chr14:71481400-71488200	Weak transcription	HMEC	breast
32	chr14:71481600-71488000	Weak transcription	NHDF-Ad	bronchial
33	chr14:71482000-71491200	Weak transcription	HepG2	liver
34	chr14:71482400-71488400	Weak transcription	HSMMtube	muscle
35	chr14:71483000-71502800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr14:71483200-71489000	Weak transcription	GM12878-XiMat	blood
37	chr14:71483600-71488400	Weak transcription	Primary B cells from cord blood	blood
38	chr14:71483800-71488800	Weak transcription	Primary T cells from cord blood	blood
39	chr14:71483800-71506200	Weak transcription	Brain Substantia Nigra	brain
40	chr14:71485000-71503600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr14:71485400-71488000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:71485600-71488600	Strong transcription	Fetal Lung	lung
43	chr14:71485600-71492200	Strong transcription	Primary B cells from peripheral blood	blood
44	chr14:71485800-71488400	Strong transcription	Adipose Nuclei	Adipose
45	chr14:71485800-71493000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr14:71486000-71488200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr14:71486000-71488200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr14:71486000-71488200	Weak transcription	NHEK	skin
49	chr14:71486200-71488000	Weak transcription	Hela-S3	cervix
50	chr14:71486200-71488200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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