Variant report

Variant	rs56112091
Chromosome Location	chr8:104091527-104091528
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:104090004..104092160-chr8:104092634..104094909,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs59433874	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs59745112	0.95[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7819080	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7829540	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831413	chr8:104085141-104269789	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv891247	chr8:104090979-104121862	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:104083600-104093000	Weak transcription	Placenta	Placenta
2	chr8:104087600-104093200	Weak transcription	Brain Germinal Matrix	brain
3	chr8:104088400-104091600	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:104088600-104092000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr8:104089000-104091600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
6	chr8:104089400-104091600	Enhancers	Liver	Liver
7	chr8:104090200-104091600	Enhancers	Primary B cells from cord blood	blood
8	chr8:104090200-104091600	Enhancers	K562	blood
9	chr8:104090400-104091600	Enhancers	Fetal Stomach	stomach
10	chr8:104090400-104091800	Enhancers	Sigmoid Colon	Sigmoid Colon
11	chr8:104090400-104093000	Weak transcription	Gastric	stomach
12	chr8:104090400-104093000	Weak transcription	Lung	lung
13	chr8:104090600-104091600	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr8:104090800-104091600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:104090800-104092200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:104091000-104091600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:104091000-104091600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:104091000-104091600	Enhancers	Fetal Brain Male	brain
19	chr8:104091000-104091600	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr8:104091000-104091600	Enhancers	Fetal Muscle Leg	muscle
21	chr8:104091200-104091600	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr8:104091200-104091600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr8:104091200-104091600	Enhancers	Fetal Lung	lung
24	chr8:104091200-104091600	Flanking Active TSS	Right Atrium	heart
25	chr8:104091200-104091600	Enhancers	Small Intestine	intestine
26	chr8:104091200-104092000	Enhancers	Primary hematopoietic stem cells	blood
27	chr8:104091200-104092200	Enhancers	Left Ventricle	heart
28	chr8:104091400-104091600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:104091400-104091600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:104091400-104091600	Enhancers	Duodenum Mucosa	Duodenum
31	chr8:104091400-104091600	Enhancers	Ovary	ovary
32	chr8:104091400-104091600	Enhancers	Rectal Mucosa Donor 29	rectum
33	chr8:104091400-104091600	Flanking Active TSS	Rectal Smooth Muscle	rectum
34	chr8:104091400-104091600	Enhancers	GM12878-XiMat	blood
35	chr8:104091400-104091600	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr8:104091400-104091600	Enhancers	NHLF	lung
37	chr8:104091400-104091800	Enhancers	Colon Smooth Muscle	Colon
38	chr8:104091400-104092200	Enhancers	Adipose Nuclei	Adipose
39	chr8:104091400-104092200	Enhancers	Pancreas	Pancrea
40	chr8:104091400-104092200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
41	chr8:104091400-104092200	Enhancers	HUVEC	blood vessel
42	chr8:104091400-104092800	Weak transcription	Stomach Mucosa	stomach
43	chr8:104091400-104093200	Weak transcription	Spleen	Spleen
44	chr8:104091400-104094000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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