Variant report

Variant	rs56112286
Chromosome Location	chr15:73274351-73274352
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11635651	1.00[AFR][1000 genomes]
rs62015257	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62016088	1.00[AFR][1000 genomes]
rs62017647	1.00[AFR][1000 genomes]
rs72739436	1.00[AFR][1000 genomes]
rs72741416	1.00[AFR][1000 genomes]
rs72741424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73272600-73274800	Weak transcription	Fetal Stomach	stomach
2	chr15:73272800-73274600	Weak transcription	Fetal Brain Female	brain
3	chr15:73272800-73274600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr15:73272800-73275000	Weak transcription	Fetal Lung	lung
5	chr15:73274200-73276000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:73274200-73278000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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