Variant report

Variant	rs561124085
Chromosome Location	chr1:166944006-166944007
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916491	chr1:166000783-166948513	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	esv3345801	chr1:166943803-166945951	Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:166941800-166945400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr1:166942200-166945800	Active TSS	Fetal Brain Female	brain
3	chr1:166942400-166944200	Weak transcription	Spleen	Spleen
4	chr1:166943000-166944200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:166943000-166944400	Flanking Active TSS	Dnd41	blood
6	chr1:166943000-166944400	Flanking Active TSS	GM12878-XiMat	blood
7	chr1:166943200-166945400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr1:166943200-166945400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:166943200-166945600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr1:166943400-166944200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:166943400-166944200	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr1:166943400-166946000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr1:166943600-166944200	Bivalent Enhancer	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr1:166943600-166944200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
15	chr1:166943600-166944200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
16	chr1:166943600-166944200	Enhancers	Lung	lung
17	chr1:166943600-166944200	Bivalent/Poised TSS	NH-A	brain
18	chr1:166943600-166944600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
19	chr1:166943600-166945800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
21	chr1:166943800-166944200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
22	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
23	chr1:166943800-166944200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
24	chr1:166943800-166944200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr1:166943800-166944200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
27	chr1:166943800-166944200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr1:166943800-166944200	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:166943800-166944200	Flanking Active TSS	Brain Angular Gyrus	brain
30	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	Colon Smooth Muscle	Colon
31	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
32	chr1:166943800-166944200	Flanking Active TSS	Fetal Heart	heart
33	chr1:166943800-166944200	Enhancers	Pancreas	Pancrea
34	chr1:166943800-166944200	Enhancers	Psoas Muscle	Psoas
35	chr1:166943800-166944200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
36	chr1:166943800-166944200	Flanking Active TSS	Thymus	Thymus
37	chr1:166943800-166944400	Flanking Active TSS	Fetal Brain Male	brain
38	chr1:166943800-166944400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
39	chr1:166943800-166944600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr1:166943800-166944600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
41	chr1:166943800-166945400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:166943800-166945400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
43	chr1:166943800-166945400	Active TSS	Brain Hippocampus Middle	brain
44	chr1:166943800-166945600	Active TSS	Right Ventricle	heart
45	chr1:166944000-166944200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr1:166944000-166944200	Flanking Bivalent TSS/Enh	H9 Cell Line	embryonic stem cell
47	chr1:166944000-166944200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
48	chr1:166944000-166944200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr1:166944000-166944200	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr1:166944000-166944200	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links