The 2.0 version of rSNPBase

Variant report

Variant rs56113269
Chromosome Location chr20:1655186-1655187
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:26 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr20:1646200-1655200 Enhancers Primary T killer naive cells fromperipheralblood blood
2 chr20:1646200-1655200 Weak transcription Spleen Spleen
3 chr20:1646200-1655400 Enhancers Primary T helper cells fromperipheralblood blood
4 chr20:1646200-1660200 Enhancers Primary T cells fromperipheralblood blood
5 chr20:1651800-1655200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
6 chr20:1651800-1656200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
7 chr20:1652000-1655400 Enhancers Brain Substantia Nigra brain
8 chr20:1652000-1656800 Enhancers Primary Natural Killer cells fromperipheralblood blood
9 chr20:1652000-1656800 Enhancers Brain Cingulate Gyrus brain
10 chr20:1652400-1656800 Enhancers Fetal Thymus thymus
11 chr20:1652400-1658200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
12 chr20:1653000-1656800 Enhancers Brain Inferior Temporal Lobe brain
13 chr20:1653600-1657400 Weak transcription GM12878-XiMat blood
14 chr20:1653600-1657800 Weak transcription Thymus Thymus
15 chr20:1654400-1655200 Weak transcription Brain Hippocampus Middle brain
16 chr20:1654400-1656000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
17 chr20:1654600-1656600 Weak transcription Brain Anterior Caudate brain
18 chr20:1654800-1655800 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
19 chr20:1654800-1656200 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
20 chr20:1655000-1655400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr20:1655000-1655600 Flanking Active TSS Primary T helper memory cells from peripheral blood 1 blood
22 chr20:1655000-1655600 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
23 chr20:1655000-1655800 Flanking Active TSS Primary T killer memory cells from peripheral blood blood
24 chr20:1655000-1656000 Flanking Active TSS Primary T cells from cord blood blood
25 chr20:1655000-1656000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
26 chr20:1655000-1657600 Enhancers Primary mononuclear cells fromperipheralblood Blood

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Last update: Aug 31, 2015