Variant report

Variant	rs561149886
Chromosome Location	chr5:60572689-60572690
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60560892..60563443-chr5:60571695..60574490,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv823088	chr5:60572580-60577406	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60561000-60573200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:60564600-60575400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:60564600-60576000	Weak transcription	Psoas Muscle	Psoas
5	chr5:60566000-60573200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:60566400-60573000	Weak transcription	Stomach Mucosa	stomach
7	chr5:60566600-60573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:60567800-60577200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:60568200-60573000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:60568800-60573200	Weak transcription	HSMMtube	muscle
11	chr5:60569000-60572800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr5:60569000-60572800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:60569000-60574000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:60569200-60574600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr5:60569400-60573000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:60569400-60573000	Weak transcription	Brain Substantia Nigra	brain
17	chr5:60569400-60573200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:60569400-60574000	Enhancers	Primary B cells from cord blood	blood
19	chr5:60569600-60572800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:60569800-60573200	Weak transcription	Right Atrium	heart
21	chr5:60570000-60573200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:60570000-60573800	Enhancers	NHLF	lung
23	chr5:60570200-60573200	Enhancers	NHDF-Ad	bronchial
24	chr5:60570600-60573200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr5:60570600-60573200	Enhancers	HUVEC	blood vessel
26	chr5:60570800-60573200	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:60570800-60573600	Enhancers	Primary hematopoietic stem cells	blood
28	chr5:60570800-60573800	Enhancers	A549	lung
29	chr5:60570800-60574400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:60571000-60572800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
31	chr5:60571000-60573400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:60571000-60573400	Enhancers	Placenta	Placenta
33	chr5:60571000-60573600	Enhancers	Primary B cells from peripheral blood	blood
34	chr5:60571000-60573800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:60571000-60574400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr5:60571000-60574400	Enhancers	NHEK	skin
37	chr5:60571200-60573000	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr5:60571200-60573600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr5:60571200-60573600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr5:60571200-60573600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:60571200-60573800	Enhancers	HMEC	breast
42	chr5:60571200-60574400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:60571200-60576600	Weak transcription	Pancreas	Pancrea
44	chr5:60571600-60574600	Weak transcription	Small Intestine	intestine
45	chr5:60571800-60572800	Weak transcription	Adipose Nuclei	Adipose
46	chr5:60571800-60573000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr5:60571800-60573400	Enhancers	Esophagus	oesophagus
48	chr5:60571800-60574600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr5:60571800-60583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr5:60572000-60572800	Weak transcription	Primary T helper cells fromperipheralblood	blood

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