Variant report

Variant	rs56116531
Chromosome Location	chr11:104825728-104825729
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12280514	1.00[AMR][1000 genomes]
rs3888096	1.00[AMR][1000 genomes]
rs45594931	1.00[AMR][1000 genomes]
rs481367	1.00[AMR][1000 genomes]
rs496540	1.00[AMR][1000 genomes]
rs521752	1.00[AMR][1000 genomes]
rs533867	1.00[AMR][1000 genomes]
rs547913	1.00[AMR][1000 genomes]
rs552761	1.00[AMR][1000 genomes]
rs560646	1.00[AMR][1000 genomes]
rs578500	1.00[AMR][1000 genomes]
rs594572	1.00[AMR][1000 genomes]
rs644121	1.00[AMR][1000 genomes]
rs644963	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832255	chr11:104674918-104846961	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv898355	chr11:104730322-104897843	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv1040784	chr11:104763797-104855878	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv898356	chr11:104779195-104838471	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	esv3385159	chr11:104786549-105051555	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv1041081	chr11:104797775-104912458	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104812600-104826800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:104812800-104826200	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr11:104812800-104826600	Strong transcription	Primary hematopoietic stem cells	blood
4	chr11:104812800-104829200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr11:104812800-104831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:104813000-104825800	Strong transcription	Dnd41	blood
7	chr11:104813200-104825800	Strong transcription	Primary T cells from cord blood	blood
8	chr11:104813200-104825800	Strong transcription	Duodenum Mucosa	Duodenum
9	chr11:104813600-104825800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:104813600-104825800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:104813800-104826800	Strong transcription	Primary B cells from cord blood	blood
12	chr11:104813800-104837200	Weak transcription	Colon Smooth Muscle	Colon
13	chr11:104814000-104838200	Weak transcription	Fetal Kidney	kidney
14	chr11:104814800-104825800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr11:104815400-104825800	Strong transcription	NHEK	skin
16	chr11:104816600-104825800	Strong transcription	HUVEC	blood vessel
17	chr11:104816600-104826600	Weak transcription	Stomach Mucosa	stomach
18	chr11:104817600-104826000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr11:104817800-104837000	Weak transcription	Right Ventricle	heart
20	chr11:104818000-104827000	Strong transcription	NHLF	lung
21	chr11:104818200-104825800	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr11:104818200-104827000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr11:104818200-104827600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:104818400-104826200	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr11:104819000-104826000	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:104821200-104829400	Weak transcription	Pancreas	Pancrea
27	chr11:104821200-104836000	Weak transcription	Gastric	stomach
28	chr11:104821800-104827000	Weak transcription	HepG2	liver
29	chr11:104821800-104827200	Weak transcription	Fetal Intestine Small	intestine
30	chr11:104821800-104829600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:104821800-104831800	Weak transcription	Fetal Stomach	stomach
32	chr11:104821800-104832000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr11:104821800-104834400	Weak transcription	Thymus	Thymus
34	chr11:104821800-104836600	Weak transcription	Aorta	Aorta
35	chr11:104821800-104837400	Weak transcription	HSMMtube	muscle
36	chr11:104822000-104827400	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr11:104822000-104834200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr11:104822000-104836800	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:104822200-104831600	Weak transcription	Lung	lung
40	chr11:104822200-104832000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr11:104824200-104827200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:104824200-104827200	Weak transcription	HMEC	breast
43	chr11:104824200-104832000	Weak transcription	Spleen	Spleen
44	chr11:104824400-104836000	Weak transcription	Psoas Muscle	Psoas
45	chr11:104825000-104825800	Genic enhancers	Sigmoid Colon	Sigmoid Colon
46	chr11:104825000-104831800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr11:104825200-104825800	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr11:104825200-104825800	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr11:104825200-104826600	Weak transcription	NHDF-Ad	bronchial
50	chr11:104825200-104831200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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