Variant report

Variant	rs561167350
Chromosome Location	chr1:180751859-180751860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:180745041..180748081-chr1:180751703..180755514,3	MCF-7	breast:
2	chr1:180750632..180752592-chr1:180753613..180756840,3	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv3777	chr1:180741213-180780313	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv548346	chr1:180747033-180755321	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3492942	chr1:180748679-180756477	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3492947	chr1:180749054-180756402	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3492945	chr1:180749543-180756750	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3492946	chr1:180749637-180755448	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3452584	chr1:180749640-180755552	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3492943	chr1:180749676-180755458	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3492944	chr1:180749764-180755403	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv498695	chr1:180749768-180755398	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3452585	chr1:180749769-180755398	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3492948	chr1:180749769-180755398	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv20795	chr1:180750406-180755506	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv548347	chr1:180750481-180754933	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv548348	chr1:180750481-180755259	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv548349	chr1:180750481-180755321	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv548350	chr1:180750701-180755188	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv548351	chr1:180750701-180755321	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv548352	chr1:180751409-180755259	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv548353	chr1:180751409-180755321	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv548354	chr1:180751636-180755321	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180713000-180814200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:180740200-180753000	Weak transcription	Small Intestine	intestine
3	chr1:180740200-180761000	Weak transcription	Psoas Muscle	Psoas
4	chr1:180740800-180775600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:180741000-180757200	Weak transcription	Primary B cells from cord blood	blood
6	chr1:180741600-180784000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:180743400-180757200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:180743400-180763000	Weak transcription	HSMM	muscle
9	chr1:180744000-180757200	Weak transcription	Primary T cells from cord blood	blood
10	chr1:180747000-180756800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:180747800-180761000	Weak transcription	Aorta	Aorta
12	chr1:180748200-180755800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:180749400-180761200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr1:180749600-180761200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:180751000-180753000	Enhancers	Left Ventricle	heart
16	chr1:180751200-180752400	Enhancers	Brain Anterior Caudate	brain
17	chr1:180751400-180774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:180751800-180752800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:180751800-180754000	Weak transcription	Fetal Brain Male	brain
20	chr1:180751800-180755000	Weak transcription	Fetal Brain Female	brain

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