Variant report

Variant	rs561168
Chromosome Location	chr13:110884208-110884209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110876873..110878993-chr13:110883696..110885536,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16975708	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs61963281	0.97[EUR][1000 genomes]
rs61963290	1.00[EUR][1000 genomes]
rs6492247	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs7318128	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052147	chr13:110765635-110917782	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110866400-110885000	Weak transcription	Fetal Intestine Large	intestine
2	chr13:110869000-110898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:110876400-110884600	Weak transcription	Aorta	Aorta
4	chr13:110878800-110885000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr13:110879000-110884600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr13:110879000-110885000	Weak transcription	Osteobl	bone
7	chr13:110879000-110888400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr13:110879000-110889200	Weak transcription	Fetal Intestine Small	intestine
9	chr13:110879600-110890000	Weak transcription	Fetal Kidney	kidney
10	chr13:110880000-110884400	Enhancers	Placenta	Placenta
11	chr13:110880200-110884400	Weak transcription	Fetal Lung	lung
12	chr13:110880200-110884600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr13:110880800-110885400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:110881400-110894800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr13:110881400-110899800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr13:110881600-110884400	Enhancers	Left Ventricle	heart
17	chr13:110881600-110900600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr13:110882200-110885000	Weak transcription	HSMMtube	muscle
19	chr13:110882400-110885000	Weak transcription	HSMM	muscle
20	chr13:110882400-110900400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr13:110882600-110884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr13:110882600-110885000	Weak transcription	Ovary	ovary
23	chr13:110882600-110886800	Enhancers	Colon Smooth Muscle	Colon
24	chr13:110882600-110898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr13:110882600-110899600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr13:110882600-110913600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr13:110882800-110884400	Weak transcription	Fetal Heart	heart
28	chr13:110882800-110884400	Weak transcription	NHLF	lung
29	chr13:110882800-110884600	Weak transcription	NHDF-Ad	bronchial
30	chr13:110882800-110900600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr13:110883000-110885200	Weak transcription	Lung	lung
32	chr13:110883200-110884600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr13:110883200-110885400	Genic enhancers	NH-A	brain
34	chr13:110883200-110895000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:110883400-110884400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr13:110883400-110884400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr13:110883400-110885000	Enhancers	Right Atrium	heart
38	chr13:110883400-110885000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
39	chr13:110883600-110884400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr13:110883600-110884600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr13:110883600-110884800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr13:110883600-110885000	Enhancers	Adipose Nuclei	Adipose
43	chr13:110883600-110886200	Weak transcription	Spleen	Spleen
44	chr13:110883800-110884600	Enhancers	NHEK	skin
45	chr13:110883800-110885000	Enhancers	HUVEC	blood vessel
46	chr13:110884000-110884400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr13:110884000-110884600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr13:110884000-110885000	Enhancers	Fetal Muscle Leg	muscle
49	chr13:110884000-110885200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr13:110884000-110885400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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