Variant report

Variant	rs56118006
Chromosome Location	chr17:33869301-33869302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33869056..33871204-chr17:33904265..33907146,2	K562	blood:
2	chr17:33868292..33870030-chr17:33881213..33883441,2	K562	blood:

Variant related genes	Relation type
ENSG00000006125	Chromatin interaction
ENSG00000108733	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs55864203	1.00[AMR][1000 genomes]
rs56101728	1.00[AMR][1000 genomes]
rs59005988	1.00[AMR][1000 genomes]
rs60575561	1.00[AMR][1000 genomes]
rs61285114	1.00[AMR][1000 genomes]
rs73989732	1.00[AMR][1000 genomes]
rs73990290	1.00[AMR][1000 genomes]
rs73990291	1.00[AMR][1000 genomes]
rs73990295	1.00[AMR][1000 genomes]
rs73992831	1.00[AMR][1000 genomes]
rs73992847	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73992850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73992855	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73992856	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33862800-33869400	Weak transcription	Spleen	Spleen
2	chr17:33866000-33869800	Enhancers	Lung	lung
3	chr17:33868400-33869400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr17:33868400-33870600	Enhancers	Fetal Thymus	thymus
5	chr17:33868400-33871000	Enhancers	Primary B cells from peripheral blood	blood
6	chr17:33868600-33869400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:33868600-33870000	Weak transcription	Adipose Nuclei	Adipose
8	chr17:33868600-33870000	Weak transcription	K562	blood
9	chr17:33868600-33870200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr17:33868600-33870400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr17:33868600-33870800	Enhancers	Primary B cells from cord blood	blood
12	chr17:33868600-33871600	Enhancers	Primary hematopoietic stem cells	blood
13	chr17:33868600-33871600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr17:33868600-33872200	Weak transcription	Stomach Mucosa	stomach
15	chr17:33868600-33872200	Weak transcription	A549	lung
16	chr17:33868800-33869600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:33868800-33870400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr17:33868800-33870400	Enhancers	Thymus	Thymus
19	chr17:33868800-33871400	Enhancers	HUVEC	blood vessel
20	chr17:33869000-33869600	Enhancers	GM12878-XiMat	blood
21	chr17:33869000-33869800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr17:33869000-33870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr17:33869000-33870000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr17:33869000-33870200	Enhancers	Duodenum Mucosa	Duodenum
25	chr17:33869000-33870400	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr17:33869000-33870400	Enhancers	Dnd41	blood
27	chr17:33869000-33871000	Weak transcription	Small Intestine	intestine
28	chr17:33869000-33872600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr17:33869000-33873200	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr17:33869200-33869400	Enhancers	Placenta	Placenta
31	chr17:33869200-33869600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr17:33869200-33870600	Weak transcription	Primary T helper cells fromperipheralblood	blood

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