Variant report

Variant	rs561191849
Chromosome Location	chr7:152841706-152841707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:152841676-152841726	Jurkat	blood:	n/a
2	chr7:152841676-152841726	HEK293	kidney:	embryo
3	chr7:152841676-152841726	BE2_C	brain:	n/a
4	chr7:152841676-152841726	NT2-D1	testis:	n/a
5	chr7:152841676-152841726	HAEpiC	amniotic membrane:	n/a
6	chr7:152841676-152841726	MCF-7	breast:	n/a
7	chr7:152841676-152841726	Caco-2	colon:	n/a
8	chr7:152841676-152841726	NB4	blood:	n/a
9	chr7:152841676-152841726	HRE	kidney:	n/a
10	chr7:152841676-152841726	AG10803	skin:	n/a
11	chr7:152841676-152841726	IMR90	lung:	fetal
12	chr7:152841676-152841726	GM19239	blood:	n/a
13	chr7:152841676-152841726	ECC-1	luminal epithelium:	n/a
14	chr7:152841676-152841726	HL-60	blood:	n/a
15	chr7:152841676-152841726	BJ	skin:	n/a
16	chr7:152841676-152841726	HEEpiC	esophagus:	n/a
17	chr7:152841676-152841726	Hela-S3	cervix:	n/a
18	chr7:152841676-152841726	HCPEpiC	choroid plexus:	n/a
19	chr7:152841676-152841726	ovcar-3	ovarian:	n/a
20	chr7:152841676-152841726	SK-N-SH_RA	brain:	n/a
21	chr7:152841676-152841726	SK-N-MC	brain:	n/a
22	chr7:152841676-152841726	GM12878	blood:	n/a
23	chr7:152841676-152841726	PrEC	prostate:	n/a
24	chr7:152841676-152841726	HCM	heart:	n/a
25	chr7:152841676-152841726	HCT-116	colon:	n/a
26	chr7:152841676-152841726	Hepatocyte	liver:	n/a
27	chr7:152841676-152841726	LNCaP	prostate:	n/a
28	chr7:152841676-152841726	AG04449	skin:	fetal
29	chr7:152841676-152841726	HIPEpiC	eye:	n/a
30	chr7:152841676-152841726	HRCEpiC	kidney:	n/a
31	chr7:152841676-152841726	AG04450	lung:	fetal
32	chr7:152841676-152841726	AoSMC	blood vessel:	n/a
33	chr7:152841676-152841726	A549	lung:	n/a
34	chr7:152841676-152841726	K562	blood:	n/a
35	chr7:152841676-152841726	HCF	heart:	n/a
36	chr7:152841676-152841726	AG09309	skin:	n/a
37	chr7:152841676-152841726	RPTEC	kidney:	n/a
38	chr7:152841676-152841726	PANC-1	pancreas:	n/a
39	chr7:152841676-152841726	U87	brain:	n/a
40	chr7:152841676-152841726	MCF10A-Er-Src	breast:	n/a
41	chr7:152841676-152841726	SAEC	small airway:	n/a
42	chr7:152841676-152841726	HRPEpiC	eye:	n/a
43	chr7:152841676-152841726	GM06990	blood:	n/a
44	chr7:152841676-152841726	NHDF-neo	bronchial:	n/a
45	chr7:152841676-152841726	AG09319	gingival:	n/a
46	chr7:152841676-152841726	GM12892	blood:	n/a
47	chr7:152841676-152841726	T-47D	breast:	n/a
48	chr7:152841676-152841726	HMEC	breast:	n/a
49	chr7:152841676-152841726	CMK	blood:	n/a
50	chr7:152841676-152841726	PFSK-1	brain:	n/a

No data

Variant related genes	Relation type
ENSG00000224104	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027100	chr7:152294734-152935140	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv532221	chr7:152371297-152884547	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv868873	chr7:152371297-152900113	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv532222	chr7:152504090-153450290	Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv1034937	chr7:152566162-152854895	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv831194	chr7:152762400-152963937	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3384970	chr7:152789043-152858746	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv970618	chr7:152839706-152842786	Inactive region	CpG island lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links