Variant report

Variant	rs56120108
Chromosome Location	chr11:34728389-34728390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs56202470	0.87[AFR][1000 genomes]
rs58907934	0.87[AFR][1000 genomes]
rs61321894	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832117	chr11:34639008-34831199	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1045130	chr11:34641598-34777725	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1052192	chr11:34641598-34781288	ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1051492	chr11:34641598-34789331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv1052008	chr11:34641598-34794024	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv467788	chr11:34642493-34770494	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
7	nsv553998	chr11:34642493-34770494	Enhancers Strong transcription Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
8	nsv518807	chr11:34642493-34780936	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv519718	chr11:34642493-34780936	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv467789	chr11:34642493-34780936	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
11	nsv467790	chr11:34642493-34780936	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
12	nsv553999	chr11:34642493-34780936	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
13	nsv554000	chr11:34643780-34780936	Genic enhancers Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
14	nsv869812	chr11:34648088-34810956	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
15	nsv897213	chr11:34695389-34752562	ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	esv3322562	chr11:34726276-34730574	Enhancers Weak transcription ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
17	nsv512218	chr11:34727381-34729414	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
18	esv3488216	chr11:34727426-34729624	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	n/a
19	esv9728	chr11:34727864-34728822	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
20	esv3488221	chr11:34727969-34728697	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3391319	chr11:34727977-34728698	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv3459408	chr11:34727986-34728723	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
23	esv3488218	chr11:34728012-34728731	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
24	esv3459385	chr11:34728036-34728685	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv3459397	chr11:34728042-34728689	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
26	esv3488215	chr11:34728057-34728670	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv3459363	chr11:34728060-34728672	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
28	esv3488217	chr11:34728063-34728666	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
29	esv3433672	chr11:34728083-34728636	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
30	esv3459374	chr11:34728108-34728621	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
31	esv3488220	chr11:34728118-34728621	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
32	esv3459419	chr11:34728122-34728619	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
33	esv3488222	chr11:34728122-34728619	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34716800-34731000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:34719800-34728400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:34724200-34728400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:34724200-34728400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr11:34724200-34728400	Weak transcription	Esophagus	oesophagus
6	chr11:34724200-34729000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:34724200-34730800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:34724200-34731000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:34724200-34731000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:34724200-34731200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr11:34724200-34731200	Weak transcription	Placenta	Placenta
12	chr11:34724400-34728400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:34724400-34733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:34725000-34731000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr11:34725400-34730800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:34726600-34728400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:34728200-34729600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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