Variant report

Variant	rs56121050
Chromosome Location	chr7:150872674-150872675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:150872673-150873272	A549	lung:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150863087..150865291-chr7:150871915..150873592,2	K562	blood:
2	chr7:150811393..150813033-chr7:150871276..150873059,2	MCF-7	breast:
3	chr7:150722965..150724842-chr7:150872237..150873917,2	MCF-7	breast:
4	chr7:150872087..150875042-chr7:150939202..150940753,2	K562	blood:
5	chr7:150872457..150873456-chr7:151000247..151001139,5	MCF-7	breast:
6	chr7:150820753..150821766-chr7:150872510..150873067,3	MCF-7	breast:
7	chr7:150863436..150865058-chr7:150871430..150873448,2	MCF-7	breast:
8	chr7:150821015..150821776-chr7:150872303..150873090,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
GBX1	TF binding region
ENSG00000133612	Chromatin interaction
ENSG00000082014	Chromatin interaction
ENSG00000164900	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62489632	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62489648	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150865600-150877800	Weak transcription	Right Atrium	heart
2	chr7:150868600-150877800	Weak transcription	Left Ventricle	heart
3	chr7:150872000-150877800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:150872400-150872800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr7:150872600-150872800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr7:150872600-150873000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:150872600-150873200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:150872600-150873600	Strong transcription	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
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