Variant report

Variant	rs561217764
Chromosome Location	chr9:95639523-95639524
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95630407..95632096-chr9:95638470..95640204,2	K562	blood:
2	chr9:95570373..95571952-chr9:95637590..95640500,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000187984	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv893574	chr9:95580376-95688099	Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv972781	chr9:95639258-95671744	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95609000-95639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:95616200-95639800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:95616400-95639800	Weak transcription	Small Intestine	intestine
4	chr9:95616600-95639600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr9:95618200-95639800	Weak transcription	Colonic Mucosa	Colon
6	chr9:95622600-95639600	Weak transcription	Fetal Kidney	kidney
7	chr9:95622600-95639800	Weak transcription	Aorta	Aorta
8	chr9:95625600-95639600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr9:95628200-95639800	Weak transcription	Right Atrium	heart
10	chr9:95630600-95639600	Weak transcription	Liver	Liver
11	chr9:95631000-95639600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr9:95631200-95639600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr9:95631200-95639800	Weak transcription	Placenta	Placenta
14	chr9:95631400-95639800	Weak transcription	Fetal Muscle Trunk	muscle
15	chr9:95631800-95639600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:95633200-95639600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:95633200-95639600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:95633200-95639600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:95633200-95639800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr9:95633200-95639800	Weak transcription	Left Ventricle	heart
21	chr9:95633200-95639800	Weak transcription	Lung	lung
22	chr9:95633200-95639800	Weak transcription	Thymus	Thymus
23	chr9:95633400-95639600	Weak transcription	Fetal Thymus	thymus
24	chr9:95633400-95639800	Weak transcription	Fetal Intestine Small	intestine
25	chr9:95634400-95639600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr9:95634400-95639600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:95635000-95639600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:95635000-95639800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:95636600-95639600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:95636600-95639800	Weak transcription	HSMM	muscle
31	chr9:95637000-95639600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:95637200-95639800	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:95637400-95639600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr9:95637600-95639600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr9:95637800-95639600	Enhancers	Hela-S3	cervix
36	chr9:95638000-95639600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr9:95638000-95639600	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr9:95638000-95639800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:95638000-95639800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr9:95638000-95639800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:95638000-95639800	Weak transcription	Esophagus	oesophagus
42	chr9:95638000-95639800	Weak transcription	Gastric	stomach
43	chr9:95638000-95639800	Weak transcription	Ovary	ovary
44	chr9:95638000-95639800	Weak transcription	Pancreas	Pancrea
45	chr9:95638000-95639800	Weak transcription	Psoas Muscle	Psoas
46	chr9:95638000-95639800	Weak transcription	Right Ventricle	heart
47	chr9:95638000-95639800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr9:95638000-95639800	Weak transcription	Spleen	Spleen
49	chr9:95638000-95640400	Active TSS	GM12878-XiMat	blood
50	chr9:95638200-95639600	Weak transcription	Primary T cells fromperipheralblood	blood

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