Variant report

Variant	rs56122736
Chromosome Location	chr8:121180664-121180665
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13257307	0.98[ASN][1000 genomes]
rs13275053	0.96[ASN][1000 genomes]
rs13275595	0.97[ASN][1000 genomes]
rs16893630	0.99[ASN][1000 genomes]
rs16893631	0.98[ASN][1000 genomes]
rs2198755	0.98[ASN][1000 genomes]
rs4870721	0.99[ASN][1000 genomes]
rs67893286	0.99[ASN][1000 genomes]
rs7002691	0.83[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs7005932	0.98[ASN][1000 genomes]
rs7386561	0.85[ASN][1000 genomes]
rs7814963	0.97[ASN][1000 genomes]
rs7842537	0.98[ASN][1000 genomes]
rs961223	0.81[AFR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121159600-121186200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr8:121175600-121183600	Weak transcription	Duodenum Mucosa	Duodenum
3	chr8:121177600-121181200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:121178200-121182400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:121178200-121184800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:121178400-121194800	Weak transcription	Fetal Intestine Large	intestine
7	chr8:121179200-121180800	Genic enhancers	Fetal Stomach	stomach
8	chr8:121179400-121180800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:121179400-121180800	Enhancers	Ovary	ovary
10	chr8:121179800-121180800	Enhancers	Rectal Smooth Muscle	rectum
11	chr8:121180200-121187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:121180600-121180800	Genic enhancers	Aorta	Aorta
13	chr8:121180600-121181600	Strong transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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