Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177412767..177415044-chr3:177421223..177423851,2	MCF-7	breast:
2	chr3:177420301..177421877-chr3:177520246..177522505,2	MCF-7	breast:

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv998537	chr3:177403421-177425648	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1009087	chr3:177405231-177422275	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1013114	chr3:177421455-177443968	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177412000-177422200	Weak transcription	Fetal Heart	heart
2	chr3:177412400-177423800	Weak transcription	Thymus	Thymus
3	chr3:177412600-177424200	Weak transcription	Fetal Brain Male	brain
4	chr3:177412800-177424200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr3:177413600-177432000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr3:177419000-177423800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:177421000-177423600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:177421200-177422200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr3:177421200-177422400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr3:177421400-177422000	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:177421400-177422200	Enhancers	HMEC	breast
12	chr3:177421400-177422200	Enhancers	HUVEC	blood vessel
13	chr3:177421600-177421800	Enhancers	Brain Anterior Caudate	brain
14	chr3:177421600-177421800	Enhancers	Fetal Thymus	thymus
15	chr3:177421600-177422000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:177421600-177422000	Enhancers	Fetal Muscle Leg	muscle
17	chr3:177421600-177422000	Enhancers	Left Ventricle	heart
18	chr3:177421600-177422200	Enhancers	Esophagus	oesophagus
19	chr3:177421600-177422400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:177421600-177422800	Enhancers	Psoas Muscle	Psoas

Quick Search: