Variant report

Variant	rs561250301
Chromosome Location	chr4:1244415-1244416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:26)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:4)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:26 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:1240624-1244947	GM12878	blood:	n/a	n/a
2	POLR2A	chr4:1239447-1245326	K562	blood:	n/a	n/a
3	POLR2A	chr4:1240322-1244504	GM12891	blood:	n/a	n/a
4	POLR2A	chr4:1241019-1244546	MCF-7	breast:	n/a	n/a
5	POLR2A	chr4:1244276-1244446	A549	lung:	n/a	n/a
6	POLR2A	chr4:1239852-1245445	GM12892	blood:	n/a	n/a
7	CREB1	chr4:1241759-1244538	HepG2	liver:	n/a	n/a
8	POLR2A	chr4:1243533-1244493	HepG2	liver:	n/a	n/a
9	POLR2A	chr4:1244282-1244553	GM12878	blood:	n/a	n/a
10	POLR2A	chr4:1239867-1245313	HepG2	liver:	n/a	n/a
11	POLR2A	chr4:1244296-1244730	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:1238878-1245469	GM12878	blood:	n/a	n/a
13	CHD2	chr4:1242897-1244523	GM12878	blood:	n/a	n/a
14	POLR2A	chr4:1240747-1245005	HepG2	liver:	n/a	n/a
15	POLR2A	chr4:1239998-1245234	Raji	blood:	n/a	n/a
16	POLR2A	chr4:1239874-1244526	GM19193	blood:	n/a	n/a
17	POLR2A	chr4:1244250-1245439	GM12892	blood:	n/a	n/a
18	POLR2A	chr4:1239891-1245200	K562	blood:	n/a	n/a
19	POLR2A	chr4:1241720-1245130	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr4:1244381-1244463	GM12878	blood:	n/a	n/a
21	POLR2A	chr4:1244230-1244528	MCF-7	breast:	n/a	n/a
22	MAX	chr4:1241758-1244863	HepG2	liver:	n/a	n/a
23	MAX	chr4:1241049-1244691	HepG2	liver:	n/a	chr4:1241594-1241604 chr4:1241554-1241564 chr4:1241434-1241443 chr4:1241433-1241443
24	POLR2A	chr4:1242935-1245630	SK-N-MC	brain:	n/a	n/a
25	HEY1	chr4:1244202-1244527	K562	blood:	n/a	n/a
26	POLR2A	chr4:1239817-1245060	GM12878	blood:	n/a	n/a

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:1218830..1221524-chr4:1242783..1244802,2	MCF-7	breast:
2	chr4:1075158..1077915-chr4:1242318..1244508,3	MCF-7	breast:
3	chr4:1241391..1244976-chr4:1289369..1292052,3	MCF-7	breast:
4	chr4:1103766..1108037-chr4:1241801..1244610,3	K562	blood:
5	chr4:1159747..1163015-chr4:1240558..1244483,3	K562	blood:
6	chr4:1198322..1201004-chr4:1242228..1244589,3	K562	blood:
7	chr4:1158166..1163360-chr4:1238498..1245354,13	MCF-7	breast:
8	chr4:1242036..1244791-chr4:1580291..1583222,3	MCF-7	breast:
9	chr4:1236833..1250005-chr4:1276188..1292579,54	MCF-7	breast:
10	chr4:1236808..1249320-chr4:1336333..1343819,66	MCF-7	breast:
11	chr4:1240883..1245378-chr4:1339091..1342291,13	K562	blood:
12	chr4:1242091..1248517-chr4:1279714..1285424,16	MCF-7	breast:
13	chr4:1217670..1219491-chr4:1243014..1244747,2	K562	blood:
14	chr4:1159229..1162099-chr4:1242725..1245069,2	K562	blood:
15	chr4:1240390..1245150-chr4:1578422..1582537,5	MCF-7	breast:
16	chr4:1235141..1249133-chr4:1336906..1347308,118	MCF-7	breast:
17	chr4:1239502..1245378-chr4:1336996..1344860,21	K562	blood:
18	chr4:1216435..1221821-chr4:1240439..1244617,5	MCF-7	breast:
19	chr4:1242011..1244764-chr6:161122775..161125242,2	MCF-7	breast:
20	chr4:1238004..1248980-chr4:1275065..1286840,30	K562	blood:
21	chr4:1238004..1246805-chr4:1279798..1288475,25	K562	blood:

(count:4 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C4orf42-1	chr4:1244314-1245224	ENSG00000196810.4
2	lnc-C4orf42-1	chr4:1244047-1249698	ENSG00000196810.4
3	lnc-C4orf42-1	chr4:1243899-1246795	NONHSAT094687
4	lnc-C4orf42-1	chr4:1243899-1246244	NONHSAT094690

No data

Variant related genes	Relation type
CTBP1	TF binding region
CTBP1-AS2	TF binding region
ENSG00000163945	Chromatin interaction
ENSG00000178222	Chromatin interaction
ENSG00000273179	Chromatin interaction
ENSG00000159674	Chromatin interaction
ENSG00000122194	Chromatin interaction
ENSG00000244459	Chromatin interaction
ENSG00000251652	Chromatin interaction
ENSG00000159692	Chromatin interaction
ENSG00000090316	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:42 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv822425	chr4:540105-1413799	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	108 gene(s)	inside rSNPs	diseases
2	nsv530490	chr4:614355-1399150	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3339080	chr4:970630-1546223	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv829835	chr4:1097586-1304239	Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv878328	chr4:1141573-1990425	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases
6	nsv878329	chr4:1147407-1254930	Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
7	nsv878330	chr4:1147407-1523930	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
8	nsv878331	chr4:1159680-1254930	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	nsv461152	chr4:1159680-1415698	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
10	nsv593278	chr4:1159680-1415698	Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
11	nsv461153	chr4:1174861-1254930	Genic enhancers Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
12	nsv593279	chr4:1174861-1254930	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
13	nsv461154	chr4:1179213-1254930	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
14	nsv593280	chr4:1179213-1254930	Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
15	nsv878332	chr4:1179213-1254930	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
16	nsv997971	chr4:1191256-1518521	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv878333	chr4:1193832-1254930	Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
18	nsv461155	chr4:1203265-1352685	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
19	nsv593281	chr4:1203265-1352685	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
20	nsv1002097	chr4:1212573-1320086	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
21	nsv536986	chr4:1212573-1320086	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
22	esv1811773	chr4:1228251-1287474	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
23	esv1800629	chr4:1228451-1287274	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
24	esv1812851	chr4:1228451-1287274	Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
25	esv1823612	chr4:1228451-1287274	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
26	esv1825633	chr4:1228451-1287274	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
27	esv1838677	chr4:1231540-1274734	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
28	nsv822433	chr4:1232688-1246206	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
29	nsv878334	chr4:1232910-1254930	Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
30	esv1839490	chr4:1237014-1254930	Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
31	nsv878335	chr4:1237014-1254930	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
32	nsv878336	chr4:1238859-1254930	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
33	nsv878337	chr4:1240091-1254930	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
34	esv3338577	chr4:1240652-1245250	Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
35	nsv593287	chr4:1240962-1245277	Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
36	esv3325724	chr4:1241677-1244875	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
37	esv1837719	chr4:1241752-1245277	Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
38	esv1839051	chr4:1241752-1245277	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
39	esv1841123	chr4:1241752-1245277	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
40	esv1837491	chr4:1241969-1259650	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
41	nsv593297	chr4:1243286-1245386	Genic enhancers Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
42	nsv593298	chr4:1244267-1342521	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:1243400-1244600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
2	chr4:1243400-1244800	Transcr. at gene 5' and 3'	Dnd41	blood
3	chr4:1243400-1245000	Flanking Active TSS	Stomach Smooth Muscle	stomach
4	chr4:1243600-1244600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
5	chr4:1243600-1244600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr4:1243600-1244600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:1243600-1244600	Flanking Active TSS	Liver	Liver
8	chr4:1243600-1244600	Flanking Active TSS	Brain Substantia Nigra	brain
9	chr4:1243600-1244600	Flanking Active TSS	Colonic Mucosa	Colon
10	chr4:1243600-1244600	Flanking Active TSS	Rectal Smooth Muscle	rectum
11	chr4:1243600-1245000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr4:1243600-1245400	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
13	chr4:1243600-1245400	ZNF genes & repeats	Fetal Intestine Large	intestine
14	chr4:1243600-1248000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:1243800-1244600	Flanking Active TSS	Brain Germinal Matrix	brain
16	chr4:1243800-1244600	Flanking Active TSS	Brain Hippocampus Middle	brain
17	chr4:1243800-1244600	Flanking Active TSS	Fetal Brain Female	brain
18	chr4:1243800-1244600	Flanking Active TSS	GM12878-XiMat	blood
19	chr4:1243800-1244600	Flanking Active TSS	HepG2	liver
20	chr4:1243800-1245000	Enhancers	Spleen	Spleen
21	chr4:1243800-1245200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr4:1243800-1245800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:1243800-1247400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:1243800-1248200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
25	chr4:1244000-1244600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:1244000-1244600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:1244000-1244800	Enhancers	Primary B cells from cord blood	blood
28	chr4:1244000-1244800	Enhancers	Primary hematopoietic stem cells	blood
29	chr4:1244000-1244800	Enhancers	Gastric	stomach
30	chr4:1244000-1245000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
31	chr4:1244000-1245000	Enhancers	Stomach Mucosa	stomach
32	chr4:1244000-1245400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr4:1244000-1245400	ZNF genes & repeats	HSMM	muscle
34	chr4:1244000-1245600	ZNF genes & repeats	A549	lung
35	chr4:1244000-1245800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:1244000-1245800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr4:1244000-1245800	Enhancers	Fetal Brain Male	brain
38	chr4:1244000-1246000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
39	chr4:1244000-1246800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr4:1244000-1247200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr4:1244000-1247200	ZNF genes & repeats	Fetal Intestine Small	intestine
42	chr4:1244000-1247400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
43	chr4:1244000-1247400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
44	chr4:1244000-1247400	ZNF genes & repeats	Placenta	Placenta
45	chr4:1244000-1247600	ZNF genes & repeats	Fetal Stomach	stomach
46	chr4:1244200-1244600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr4:1244200-1244600	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr4:1244200-1244600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr4:1244200-1244600	Enhancers	Brain Cingulate Gyrus	brain
50	chr4:1244200-1244600	Enhancers	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

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