Variant report

Variant	rs56125121
Chromosome Location	chr12:12155863-12155864
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11612467	0.86[EUR][1000 genomes]
rs11613000	0.91[EUR][1000 genomes]
rs12320496	0.90[ASN][1000 genomes]
rs35258987	0.90[ASN][1000 genomes]
rs55753231	0.93[ASN][1000 genomes]
rs7296188	0.97[ASN][1000 genomes]
rs73058021	0.92[EUR][1000 genomes]
rs73058025	0.92[EUR][1000 genomes]
rs73060021	0.98[EUR][1000 genomes]
rs74062650	0.97[ASN][1000 genomes]
rs7973449	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898804	chr12:12058411-12202173	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv898805	chr12:12119414-12156322	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12146800-12161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:12152200-12156000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:12152200-12160200	Weak transcription	Fetal Thymus	thymus
4	chr12:12152400-12160000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr12:12153000-12160000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr12:12153200-12159400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr12:12153200-12160000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr12:12153200-12160000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr12:12154600-12163200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr12:12155600-12156000	Enhancers	Primary T cells fromperipheralblood	blood
11	chr12:12155800-12157400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr12:12155800-12159400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:12155800-12159400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr12:12155800-12159400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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