Variant report

Variant	rs561253095
Chromosome Location	chr7:105576320-105576321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105574538..105577469-chr7:105580139..105582810,3	K562	blood:
2	chr7:105574810..105577376-chr7:105710755..105713196,2	MCF-7	breast:
3	chr7:105575555..105576511-chr7:105649696..105650747,3	MCF-7	breast:
4	chr7:105574574..105576337-chr7:105649129..105650785,24	MCF-7	breast:
5	chr7:105573874..105581141-chr7:105646643..105653453,14	MCF-7	breast:
6	chr7:105574257..105577406-chr7:105579115..105583082,4	MCF-7	breast:
7	chr7:105575555..105576395-chr7:105649527..105650346,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3435895	chr7:105564407-105908056	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv5891	chr7:105575022-105617838	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105547000-105577800	Weak transcription	Gastric	stomach
2	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:105566000-105577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:105566000-105586400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:105571400-105576600	Enhancers	NHDF-Ad	bronchial
6	chr7:105572600-105576600	Enhancers	Stomach Smooth Muscle	stomach
7	chr7:105573200-105576800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:105573400-105579800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:105573800-105579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:105573800-105580600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:105574000-105578200	Enhancers	Stomach Mucosa	stomach
12	chr7:105574200-105578800	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:105574200-105583600	Weak transcription	Fetal Stomach	stomach
14	chr7:105574800-105576600	Enhancers	Fetal Heart	heart
15	chr7:105574800-105580600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr7:105575200-105576400	Enhancers	Liver	Liver
17	chr7:105575400-105576800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:105575600-105589000	Weak transcription	NHLF	lung
19	chr7:105576200-105576600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:105576200-105579200	Weak transcription	Fetal Intestine Small	intestine
21	chr7:105576200-105580400	Weak transcription	HepG2	liver
22	chr7:105576200-105593000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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