Variant report

Variant	rs561253517
Chromosome Location	chr7:66403462-66403463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66403410..66405393-chr7:66457555..66459835,2	K562	blood:
2	chr7:66402042..66403954-chr7:66405152..66407138,2	MCF-7	breast:
3	chr7:66402496..66404175-chr7:66454564..66457521,2	K562	blood:

Variant related genes	Relation type
ENSG00000126524	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv436556	chr7:66403338-66410081	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66387600-66407200	Weak transcription	NH-A	brain
2	chr7:66387600-66409800	Weak transcription	Fetal Kidney	kidney
3	chr7:66387600-66428000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:66388200-66406800	Weak transcription	NHLF	lung
5	chr7:66388400-66406800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:66388400-66406800	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:66388600-66403600	Weak transcription	HUVEC	blood vessel
8	chr7:66388600-66403800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:66388600-66406800	Weak transcription	NHDF-Ad	bronchial
10	chr7:66389000-66406800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr7:66389400-66405400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:66390600-66403800	Weak transcription	HSMM	muscle
13	chr7:66391200-66409800	Weak transcription	Brain Germinal Matrix	brain
14	chr7:66393000-66403600	Weak transcription	HepG2	liver
15	chr7:66393000-66406600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr7:66393400-66411800	Weak transcription	Stomach Mucosa	stomach
17	chr7:66393800-66422200	Weak transcription	Fetal Heart	heart
18	chr7:66394000-66403600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr7:66394200-66403800	Weak transcription	Hela-S3	cervix
20	chr7:66394200-66405400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:66394200-66408000	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr7:66394400-66405400	Weak transcription	HMEC	breast
23	chr7:66394400-66405600	Weak transcription	Colonic Mucosa	Colon
24	chr7:66395000-66404000	Weak transcription	NHEK	skin
25	chr7:66395400-66404000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:66395400-66406800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr7:66395400-66406800	Weak transcription	Stomach Smooth Muscle	stomach
28	chr7:66395600-66403600	Weak transcription	A549	lung
29	chr7:66395600-66404600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr7:66395600-66405400	Weak transcription	Right Atrium	heart
31	chr7:66395600-66407000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr7:66395800-66404000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:66395800-66405400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr7:66395800-66406400	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr7:66395800-66406800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr7:66395800-66406800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:66395800-66406800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr7:66395800-66408000	Weak transcription	Esophagus	oesophagus
39	chr7:66395800-66412800	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr7:66396000-66403600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:66396000-66403600	Weak transcription	Thymus	Thymus
42	chr7:66396000-66404000	Weak transcription	Primary B cells from cord blood	blood
43	chr7:66396000-66404000	Weak transcription	Brain Substantia Nigra	brain
44	chr7:66396000-66405400	Weak transcription	Spleen	Spleen
45	chr7:66396000-66406600	Weak transcription	Liver	Liver
46	chr7:66396000-66406600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:66396000-66406800	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr7:66396000-66408200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:66396000-66409800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:66396000-66415800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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