Variant report

Variant	rs561260441
Chromosome Location	chr18:10142411-10142412
allele	-/TAAT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:10114524..10117278-chr18:10140280..10142639,2	MCF-7	breast:
2	chr1:166774410..166776713-chr18:10141195..10143804,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv14276	chr18:10134666-10145472	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3410028	chr18:10134811-10145112	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2761990	chr18:10136596-10143650	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3584724	chr18:10136596-10143650	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv909368	chr18:10142323-10272979	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10137400-10144400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr18:10137800-10144400	Enhancers	NHDF-Ad	bronchial
3	chr18:10138200-10142800	Enhancers	Fetal Stomach	stomach
4	chr18:10138200-10144200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr18:10139400-10142800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr18:10139400-10143000	Enhancers	NH-A	brain
7	chr18:10139400-10143000	Enhancers	Osteobl	bone
8	chr18:10139600-10142600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr18:10139600-10142800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr18:10139800-10142800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr18:10139800-10142800	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr18:10139800-10142800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr18:10139800-10142800	Enhancers	HSMM	muscle
14	chr18:10139800-10143000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr18:10139800-10143000	Enhancers	Stomach Mucosa	stomach
16	chr18:10139800-10143000	Enhancers	HSMMtube	muscle
17	chr18:10139800-10143200	Enhancers	Placenta	Placenta
18	chr18:10139800-10144400	Enhancers	Adipose Nuclei	Adipose
19	chr18:10139800-10144400	Enhancers	Fetal Lung	lung
20	chr18:10139800-10144600	Enhancers	Fetal Muscle Leg	muscle
21	chr18:10140200-10144400	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr18:10140200-10150600	Weak transcription	Spleen	Spleen
23	chr18:10140600-10142600	Weak transcription	Left Ventricle	heart
24	chr18:10140600-10142600	Weak transcription	Ovary	ovary
25	chr18:10140600-10142600	Weak transcription	Psoas Muscle	Psoas
26	chr18:10140600-10143800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr18:10140600-10150600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr18:10141200-10144000	Weak transcription	Brain Substantia Nigra	brain
29	chr18:10141400-10142600	Weak transcription	Thymus	Thymus
30	chr18:10141400-10143000	Enhancers	Aorta	Aorta
31	chr18:10141400-10143800	Weak transcription	Brain Anterior Caudate	brain
32	chr18:10141400-10145400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr18:10141600-10142600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr18:10141600-10142800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr18:10141600-10142800	Enhancers	HUVEC	blood vessel
36	chr18:10141600-10144000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr18:10141600-10145600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr18:10141600-10150200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr18:10141800-10142800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr18:10141800-10142800	Weak transcription	Right Atrium	heart
41	chr18:10141800-10144600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr18:10141800-10145400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr18:10141800-10145400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr18:10141800-10150800	Weak transcription	Right Ventricle	heart
45	chr18:10142000-10142600	Enhancers	Fetal Kidney	kidney
46	chr18:10142000-10143000	Enhancers	A549	lung
47	chr18:10142000-10150600	Weak transcription	Gastric	stomach
48	chr18:10142400-10142600	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr18:10142400-10142600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr18:10142400-10142600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links