Variant report

Variant	rs561267110
Chromosome Location	chr9:21811507-21811508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:21811409-21811781	HCT-116	colon:	n/a	n/a
2	POLR2A	chr9:21811483-21812507	MCF-7	breast:	n/a	n/a
3	POLR2A	chr9:21811283-21811846	HepG2	liver:	n/a	n/a
4	POLR2A	chr9:21811501-21811781	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:21811237..21820561-chr9:21988636..21997115,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266732	TF binding region
ENSG00000240498	Chromatin interaction
ENSG00000266446	Chromatin interaction
ENSG00000147889	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529609	chr9:21708371-22537069	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv1026981	chr9:21748202-21811697	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
3	nsv8426	chr9:21763810-22176200	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv972653	chr9:21811294-21811794	Strong transcription Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21804000-21814200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr9:21804000-21817600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:21804000-21838200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:21804200-21813200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr9:21804200-21813200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr9:21804400-21813200	Weak transcription	Colonic Mucosa	Colon
7	chr9:21804400-21816000	Weak transcription	Fetal Kidney	kidney
8	chr9:21804800-21813600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:21805000-21812000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:21805000-21813200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr9:21805000-21816200	Weak transcription	Fetal Brain Male	brain
12	chr9:21805200-21812800	Strong transcription	Fetal Stomach	stomach
13	chr9:21805200-21813200	Weak transcription	Psoas Muscle	Psoas
14	chr9:21805200-21813400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:21805400-21812600	Strong transcription	Fetal Intestine Large	intestine
16	chr9:21805800-21813200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:21805800-21813200	Weak transcription	Brain Angular Gyrus	brain
18	chr9:21806000-21812400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:21806000-21812600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:21806000-21817600	Genic enhancers	HMEC	breast
21	chr9:21806200-21813200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr9:21806400-21812200	Strong transcription	Fetal Intestine Small	intestine
23	chr9:21806400-21812400	Strong transcription	HepG2	liver
24	chr9:21806400-21812800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr9:21806400-21813200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:21806400-21813200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr9:21806400-21819800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr9:21806600-21812200	Strong transcription	H1 Cell Line	embryonic stem cell
29	chr9:21806600-21812400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr9:21806600-21815800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:21806600-21841200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr9:21806800-21811600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:21806800-21812000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:21806800-21812000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:21806800-21812800	Strong transcription	Primary T cells from cord blood	blood
36	chr9:21806800-21813200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:21806800-21815800	Weak transcription	Brain Germinal Matrix	brain
38	chr9:21807000-21812000	Strong transcription	Fetal Muscle Leg	muscle
39	chr9:21807000-21813600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr9:21807200-21812000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr9:21807200-21812800	Strong transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:21807200-21813200	Strong transcription	H9 Cell Line	embryonic stem cell
43	chr9:21807200-21813400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr9:21807400-21812200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr9:21807400-21812200	Strong transcription	Thymus	Thymus
46	chr9:21807400-21812400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
47	chr9:21807400-21813200	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr9:21807400-21813200	Weak transcription	Brain Substantia Nigra	brain
49	chr9:21807600-21812000	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr9:21807600-21812000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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