Variant report

Variant	rs56126928
Chromosome Location	chr12:41010908-41010909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11177021	1.00[AMR][1000 genomes]
rs12306309	1.00[AMR][1000 genomes]
rs12309805	1.00[AMR][1000 genomes]
rs12316558	0.92[AFR][1000 genomes]
rs12321694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12321696	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74079041	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41010200-41011000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr12:41010200-41011200	Enhancers	Brain Anterior Caudate	brain
3	chr12:41010200-41011400	Enhancers	Brain Substantia Nigra	brain
4	chr12:41010200-41013400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:41010400-41011200	Enhancers	Brain Angular Gyrus	brain
6	chr12:41010400-41011200	Enhancers	Brain Hippocampus Middle	brain
7	chr12:41010400-41011200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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