Variant report

Variant	rs561270355
Chromosome Location	chr11:75177480-75177481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75109872..75112643-chr11:75176683..75178600,2	K562	blood:
2	chr11:75172761..75175678-chr11:75175909..75177815,2	MCF-7	breast:
3	chr11:75177141..75179157-chr11:75184884..75186837,2	K562	blood:

Variant related genes	Relation type
ENSG00000149273	Chromatin interaction
ENSG00000206941	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897920	chr11:75087520-75181249	Genic enhancers Bivalent Enhancer Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
3	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	esv993847	chr11:75176894-75187181	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75144200-75186600	Weak transcription	Gastric	stomach
2	chr11:75144400-75179800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:75145200-75186200	Weak transcription	Primary T cells from cord blood	blood
4	chr11:75145200-75186400	Strong transcription	Fetal Intestine Small	intestine
5	chr11:75147800-75186000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr11:75148200-75186000	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:75162800-75185000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr11:75163800-75186200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:75165200-75187000	Strong transcription	HepG2	liver
10	chr11:75165800-75178000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr11:75166400-75178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:75166600-75186800	Weak transcription	Pancreas	Pancrea
13	chr11:75167400-75180400	Weak transcription	Aorta	Aorta
14	chr11:75168400-75183400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr11:75172000-75184400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr11:75172200-75184400	Enhancers	Spleen	Spleen
17	chr11:75172400-75179400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:75172400-75183200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:75172600-75180400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:75173000-75181200	Enhancers	HUVEC	blood vessel
21	chr11:75173400-75185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:75173600-75185800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr11:75174200-75179400	Weak transcription	Liver	Liver
24	chr11:75174200-75180000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr11:75174600-75179200	Weak transcription	Ovary	ovary
26	chr11:75174600-75186600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:75174800-75179200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:75175000-75179800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:75175400-75177800	Weak transcription	Fetal Intestine Large	intestine
30	chr11:75175600-75184000	Enhancers	Fetal Muscle Leg	muscle
31	chr11:75176200-75177800	Enhancers	Fetal Heart	heart
32	chr11:75176200-75181000	Genic enhancers	Placenta	Placenta
33	chr11:75176200-75184600	Enhancers	HSMMtube	muscle
34	chr11:75176600-75177800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:75176600-75178000	Enhancers	Fetal Lung	lung
36	chr11:75176600-75178600	Enhancers	Right Ventricle	heart
37	chr11:75176600-75180600	Enhancers	Lung	lung
38	chr11:75176600-75180600	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr11:75176800-75177600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr11:75176800-75177600	Enhancers	Placenta Amnion	Placenta Amnion
41	chr11:75176800-75177800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr11:75176800-75177800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr11:75176800-75177800	Enhancers	HMEC	breast
44	chr11:75176800-75177800	Enhancers	NH-A	brain
45	chr11:75176800-75178000	Enhancers	H1 Cell Line	embryonic stem cell
46	chr11:75176800-75178000	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr11:75176800-75178000	Enhancers	HSMM	muscle
48	chr11:75176800-75178200	Enhancers	Left Ventricle	heart
49	chr11:75176800-75178400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:75176800-75180400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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