Variant report

Variant	rs561284383
Chromosome Location	chr10:43278932-43278933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43046301..43049301-chr10:43278095..43279962,3	K562	blood:
2	chr10:43277481..43279174-chr8:144910550..144912585,2	MCF-7	breast:
3	chr10:43132020..43136600-chr10:43277441..43279853,5	MCF-7	breast:
4	chr10:43132257..43135644-chr10:43275563..43280155,11	MCF-7	breast:
5	chr10:43133575..43134141-chr10:43278109..43279018,2	MCF-7	breast:
6	chr10:43132863..43135217-chr10:43276470..43279459,4	K562	blood:
7	chr10:43278278..43279935-chr10:43297692..43300575,2	K562	blood:
8	chr10:43132954..43135205-chr10:43277445..43279937,2	K562	blood:
9	chr10:42969989..42972327-chr10:43278200..43280239,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000179950	Chromatin interaction
ENSG00000185904	Chromatin interaction
ENSG00000196693	Chromatin interaction
ENSG00000234420	Chromatin interaction
ENSG00000272373	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550672	chr10:42753190-43441729	Bivalent Enhancer Genic enhancers Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv533331	chr10:42830221-43356410	ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv1042764	chr10:42846383-43511712	Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv1050394	chr10:42890663-43604956	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv540573	chr10:42890663-43604956	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
6	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
7	esv2758216	chr10:42965131-43510191	Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
8	esv2759746	chr10:42965131-43510191	Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
9	esv2757381	chr10:43104068-43352995	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv34929	chr10:43116194-43329770	Weak transcription Bivalent Enhancer Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv895076	chr10:43234432-43326627	Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv1047838	chr10:43234590-43379219	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
13	nsv947889	chr10:43278237-43290003	Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43277000-43279000	Active TSS	Stomach Mucosa	stomach
2	chr10:43277200-43279000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:43277200-43279000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:43277200-43279000	Active TSS	Colonic Mucosa	Colon
5	chr10:43277200-43279000	Active TSS	Rectal Smooth Muscle	rectum
6	chr10:43277200-43279200	Active TSS	HSMM	muscle
7	chr10:43277200-43279400	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr10:43277200-43279400	Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr10:43277200-43279400	Active TSS	HUES64 Cell Line	embryonic stem cell
10	chr10:43277200-43279400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr10:43277200-43279400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:43277200-43279800	Active TSS	GM12878-XiMat	blood
13	chr10:43277400-43279000	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr10:43277400-43279000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:43277400-43279000	Active TSS	HSMMtube	muscle
16	chr10:43277400-43279000	Active TSS	NHEK	skin
17	chr10:43277400-43279000	Active TSS	NHLF	lung
18	chr10:43277400-43279200	Active TSS	H9 Cell Line	embryonic stem cell
19	chr10:43277400-43279200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:43277400-43279200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr10:43277400-43279200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr10:43277400-43279200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr10:43277400-43279200	Active TSS	Pancreatic Islets	Pancreatic Islet
24	chr10:43277400-43279200	Active TSS	Ovary	ovary
25	chr10:43277400-43279400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:43277400-43279400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:43277400-43279400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:43277400-43279400	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr10:43277400-43279400	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr10:43277400-43279400	Active TSS	Fetal Intestine Large	intestine
31	chr10:43277400-43279400	Active TSS	Osteobl	bone
32	chr10:43277400-43279600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:43277400-43279800	Active TSS	A549	lung
34	chr10:43277600-43279000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr10:43277600-43279000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr10:43277600-43279000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:43277600-43279000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:43277600-43279000	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr10:43277600-43279000	Active TSS	Aorta	Aorta
40	chr10:43277600-43279000	Active TSS	Brain Hippocampus Middle	brain
41	chr10:43277600-43279000	Active TSS	Esophagus	oesophagus
42	chr10:43277600-43279000	Active TSS	Fetal Heart	heart
43	chr10:43277600-43279000	Active TSS	Fetal Intestine Small	intestine
44	chr10:43277600-43279000	Active TSS	Pancreas	Pancrea
45	chr10:43277600-43279000	Active TSS	Small Intestine	intestine
46	chr10:43277600-43279000	Active TSS	Hela-S3	cervix
47	chr10:43277600-43279000	Active TSS	NHDF-Ad	bronchial
48	chr10:43277600-43279200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr10:43277600-43279200	Active TSS	H1 Cell Line	embryonic stem cell
50	chr10:43277600-43279200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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