Variant report

Variant	rs561285658
Chromosome Location	chr20:15799577-15799578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv912793	chr20:15760969-15807441	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1847965	chr20:15766727-15807441	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv585644	chr20:15766727-15807441	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2754713	chr20:15785800-15816800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv585645	chr20:15796051-15817106	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv458935	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv585646	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3335651	chr20:15799202-15801125	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15798200-15799800	Enhancers	Placenta	Placenta
2	chr20:15798200-15799800	Enhancers	HSMMtube	muscle
3	chr20:15798400-15799600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr20:15798400-15799800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15798400-15799800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr20:15799000-15799600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr20:15799000-15799600	Enhancers	Liver	Liver
8	chr20:15799000-15799600	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr20:15799000-15799800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr20:15799000-15799800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:15799000-15799800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr20:15799000-15799800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr20:15799000-15799800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr20:15799000-15799800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr20:15799200-15799600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr20:15799200-15799600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr20:15799200-15799600	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr20:15799200-15799800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr20:15799200-15799800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr20:15799200-15799800	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr20:15799400-15799800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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