Variant report

Variant	rs561287060
Chromosome Location	chr14:65924474-65924475
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65922479..65925027-chr14:65929955..65931987,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65892800-65929600	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr14:65897000-65925600	Weak transcription	Aorta	Aorta
3	chr14:65898400-65935600	Weak transcription	Gastric	stomach
4	chr14:65899600-65929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr14:65902200-65927000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:65902400-65928400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:65903200-65925200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr14:65905800-65936600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65906000-65926800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:65911200-65942400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr14:65913200-65927000	Weak transcription	NH-A	brain
12	chr14:65913200-65928000	Weak transcription	Osteobl	bone
13	chr14:65913800-65928000	Weak transcription	HUVEC	blood vessel
14	chr14:65913800-65942400	Weak transcription	Left Ventricle	heart
15	chr14:65914600-65925000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr14:65915600-65928200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr14:65917200-65936600	Weak transcription	Pancreas	Pancrea
18	chr14:65918400-65928000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:65918400-65928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:65918600-65928000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr14:65918600-65935600	Weak transcription	Fetal Stomach	stomach
22	chr14:65918800-65924800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr14:65918800-65927000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr14:65918800-65928400	Weak transcription	Fetal Thymus	thymus
25	chr14:65920000-65928200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr14:65920400-65926000	ZNF genes & repeats	GM12878-XiMat	blood
27	chr14:65920400-65937800	Weak transcription	Ovary	ovary
28	chr14:65920600-65926800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr14:65920800-65927000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr14:65920800-65927000	Weak transcription	Fetal Lung	lung
31	chr14:65920800-65927600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:65920800-65927600	Weak transcription	Small Intestine	intestine
33	chr14:65920800-65928000	Weak transcription	Brain Angular Gyrus	brain
34	chr14:65920800-65929000	Weak transcription	K562	blood
35	chr14:65920800-65942400	Weak transcription	Stomach Mucosa	stomach
36	chr14:65921000-65928000	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:65921600-65927000	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:65921600-65927000	Weak transcription	Brain Substantia Nigra	brain
39	chr14:65921600-65928000	Weak transcription	Brain Anterior Caudate	brain
40	chr14:65921800-65928000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr14:65922000-65925200	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr14:65922200-65936400	Weak transcription	Placenta	Placenta
43	chr14:65922600-65927600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr14:65922600-65928000	Strong transcription	Primary B cells from cord blood	blood
45	chr14:65922800-65925400	Strong transcription	Primary hematopoietic stem cells	blood
46	chr14:65922800-65928200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:65922800-65928200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr14:65922800-65928600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr14:65923000-65924800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr14:65923200-65924600	ZNF genes & repeats	Fetal Intestine Small	intestine

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