Variant report

Variant	rs56129807
Chromosome Location	chr1:220522352-220522353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17565935	0.85[AMR][1000 genomes]
rs17566172	0.81[AMR][1000 genomes]
rs17567252	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17641091	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17641428	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55673394	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55807644	0.81[AMR][1000 genomes]
rs55914754	0.81[EUR][1000 genomes]
rs55991348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56040283	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56103229	0.81[AMR][1000 genomes]
rs56232675	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72730664	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72730666	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72730668	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72749218	0.81[AMR][1000 genomes]
rs72749219	0.81[AMR][1000 genomes]
rs72749221	0.81[AMR][1000 genomes]
rs72749222	0.85[AMR][1000 genomes]
rs72749226	0.81[AMR][1000 genomes]
rs72749236	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7519416	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220510800-220525600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:220511200-220526400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:220514000-220526600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr1:220515000-220523600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:220521800-220522800	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links