Variant report

Variant	rs56131254
Chromosome Location	chr4:73825026-73825027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1303974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1350777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845059	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848978	1.00[AMR][1000 genomes]
rs16848981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848984	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848989	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16848997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17838980	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41523145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56196459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57355541	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57601257	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57824486	1.00[AMR][1000 genomes]
rs57833053	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58100751	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58155862	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58205517	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58243508	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59508782	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59813207	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60023650	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs6828670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6845896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6847507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827143	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827144	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827146	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827147	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73827148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827152	1.00[AMR][1000 genomes]
rs73827153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73827202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830010	0.85[AMR][1000 genomes]
rs73830013	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949371	chr4:73678470-74094500	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1005704	chr4:73708248-73907315	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv829971	chr4:73709753-73880451	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv432611	chr4:73740665-74099265	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv523169	chr4:73752242-74120910	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
6	nsv998707	chr4:73753922-74044843	Weak transcription Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv537136	chr4:73753922-74044843	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
8	nsv917017	chr4:73754127-74044830	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
9	nsv1013174	chr4:73785324-74031884	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
10	nsv537137	chr4:73785324-74031884	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
11	nsv1012068	chr4:73817769-74003079	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
12	nsv1014088	chr4:73817769-74031884	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
13	nsv537138	chr4:73817769-74031884	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv533502	chr4:73819067-74044813	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:73818000-73825200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:73824400-73825600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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