The 2.0 version of rSNPBase

Variant report

Variant rs56131491
Chromosome Location chr6:45917141-45917142
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:45898800-45919200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
2 chr6:45903000-45917200 Strong transcription Fetal Intestine Large intestine
3 chr6:45907400-45917600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr6:45908000-45918600 Weak transcription Primary T cells fromperipheralblood blood
5 chr6:45908200-45918200 Weak transcription Colonic Mucosa Colon
6 chr6:45911000-45919200 Weak transcription Small Intestine intestine
7 chr6:45911000-45923600 Weak transcription HUES64 Cell Line embryonic stem cell
8 chr6:45911200-45918000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
9 chr6:45911400-45919000 Weak transcription Adipose Nuclei Adipose
10 chr6:45912400-45917200 Genic enhancers Left Ventricle heart
11 chr6:45912600-45923000 Genic enhancers Skeletal Muscle Male skeletal muscle
12 chr6:45912800-45928400 Weak transcription Spleen Spleen
13 chr6:45913400-45919000 Strong transcription Fetal Intestine Small intestine
14 chr6:45913800-45920000 Enhancers Placenta Placenta
15 chr6:45914200-45919200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
16 chr6:45914400-45917200 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr6:45914400-45917200 Weak transcription Rectal Smooth Muscle rectum
18 chr6:45914600-45918800 Weak transcription Stomach Smooth Muscle stomach
19 chr6:45914600-45919400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
20 chr6:45915000-45919200 Weak transcription Lung lung
21 chr6:45915200-45919000 Weak transcription Right Atrium heart
22 chr6:45915400-45919000 Weak transcription Fetal Heart heart
23 chr6:45915800-45917400 Enhancers Placenta Amnion Placenta Amnion
24 chr6:45915800-45918800 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr6:45915800-45919800 Weak transcription Duodenum Mucosa Duodenum
26 chr6:45916200-45919400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
27 chr6:45916600-45917200 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
28 chr6:45916600-45917200 Enhancers Fetal Adrenal Gland Adrenal Gland
29 chr6:45916600-45917200 Enhancers Pancreas Pancrea
30 chr6:45916600-45917200 Enhancers Psoas Muscle Psoas
31 chr6:45916800-45917200 Weak transcription Fetal Kidney kidney
32 chr6:45916800-45917200 Enhancers Fetal Muscle Leg muscle
33 chr6:45916800-45917200 Flanking Active TSS Hela-S3 cervix
34 chr6:45916800-45917200 Enhancers NH-A brain
35 chr6:45916800-45917400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr6:45916800-45917400 Enhancers Rectal Mucosa Donor 31 rectum
37 chr6:45916800-45917400 Genic enhancers Sigmoid Colon Sigmoid Colon
38 chr6:45916800-45919000 Weak transcription Right Ventricle heart
39 chr6:45917000-45917200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
40 chr6:45917000-45917200 Enhancers Gastric stomach
41 chr6:45917000-45917200 Flanking Active TSS Skeletal Muscle Female skeletal muscle

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Last update: Aug 31, 2015