Variant report

Variant	rs561315425
Chromosome Location	chr11:64759395-64759396
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:64610242..64612871-chr11:64758372..64760520,2	K562	blood:
2	chr11:64758212..64760438-chr11:64781054..64782935,2	K562	blood:

Variant related genes	Relation type
ENSG00000171219	Chromatin interaction
ENSG00000213465	Chromatin interaction
ENSG00000273003	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv555208	chr11:64645119-64771179	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1029 gene(s)	inside rSNPs	diseases
3	esv2750762	chr11:64758957-64761108	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64752400-64764200	Weak transcription	Aorta	Aorta
2	chr11:64755000-64764000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:64756200-64761600	Weak transcription	Pancreas	Pancrea
4	chr11:64756400-64764600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:64756800-64763800	Weak transcription	Psoas Muscle	Psoas
6	chr11:64757200-64763200	Weak transcription	Ovary	ovary
7	chr11:64757200-64766200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:64757800-64763800	Weak transcription	Right Atrium	heart
9	chr11:64757800-64763800	Weak transcription	Small Intestine	intestine
10	chr11:64757800-64763800	Weak transcription	Stomach Mucosa	stomach
11	chr11:64758000-64760800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:64758000-64761000	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:64758000-64762000	Weak transcription	Left Ventricle	heart
14	chr11:64758000-64762400	Weak transcription	Lung	lung
15	chr11:64758000-64763000	Weak transcription	Colonic Mucosa	Colon
16	chr11:64758000-64763600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:64758000-64763800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:64758000-64763800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:64758000-64763800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:64758000-64763800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:64758000-64763800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:64758000-64764200	Weak transcription	A549	lung
23	chr11:64758000-64766000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:64758200-64759400	Enhancers	GM12878-XiMat	blood
25	chr11:64758200-64759600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:64758200-64759600	Enhancers	Primary B cells from peripheral blood	blood
27	chr11:64758200-64761000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr11:64758200-64762200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr11:64758200-64762600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr11:64758200-64762600	Weak transcription	HepG2	liver
31	chr11:64758200-64762800	Strong transcription	Fetal Intestine Small	intestine
32	chr11:64758200-64763200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:64758200-64763800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:64758200-64763800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr11:64758200-64764000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:64758200-64764000	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:64758200-64764000	Weak transcription	Fetal Lung	lung
38	chr11:64758200-64764000	Weak transcription	NHLF	lung
39	chr11:64758200-64764000	Weak transcription	Osteobl	bone
40	chr11:64758200-64764200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:64758200-64764200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:64758400-64759400	Enhancers	Monocytes-CD14+_RO01746	blood
43	chr11:64758400-64759600	Enhancers	Primary B cells from cord blood	blood
44	chr11:64758400-64761000	Enhancers	Primary neutrophils fromperipheralblood	blood
45	chr11:64758400-64762600	Weak transcription	K562	blood
46	chr11:64758400-64763800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:64758400-64764000	Weak transcription	HUVEC	blood vessel
48	chr11:64758400-64765800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr11:64758800-64759400	Enhancers	Spleen	Spleen
50	chr11:64758800-64759600	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links