Variant report

Variant	rs561325136
Chromosome Location	chr4:77995648-77995649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77869773..77871632-chr4:77995514..77998178,4	K562	blood:
2	chr4:77993925..77999822-chr4:78072652..78081114,32	MCF-7	breast:
3	chr4:77975545..77980821-chr4:77994993..77998408,5	MCF-7	breast:
4	chr4:77994543..78000148-chr4:78076403..78082799,9	K562	blood:
5	chr4:77995405..77999334-chr4:78000731..78006327,9	MCF-7	breast:
6	chr4:77869773..77872075-chr4:77995627..77998726,3	K562	blood:
7	chr4:77994285..77999121-chr4:78003590..78007383,5	K562	blood:
8	chr4:77994107..77999899-chr4:78076204..78082875,32	MCF-7	breast:
9	chr4:77870359..77873653-chr4:77995177..77998877,4	MCF-7	breast:
10	chr4:77979701..77986849-chr4:77990863..77998763,10	MCF-7	breast:
11	chr4:77722957..77725210-chr4:77994122..77996396,2	K562	blood:
12	chr4:77977102..77979783-chr4:77995512..77998143,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000214062	Chromatin interaction
ENSG00000138764	Chromatin interaction
ENSG00000138758	Chromatin interaction
ENSG00000118816	Chromatin interaction
ENSG00000224218	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879499	chr4:77990904-78003416	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3330627	chr4:77995278-77997926	Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3357193	chr4:77995453-77998301	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77990600-77995800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:77992000-77996200	Weak transcription	Spleen	Spleen
3	chr4:77992000-77998200	Active TSS	GM12878-XiMat	blood
4	chr4:77993200-77996000	Flanking Active TSS	Dnd41	blood
5	chr4:77993400-77996000	Flanking Active TSS	Primary B cells from cord blood	blood
6	chr4:77993400-77996000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
7	chr4:77993600-77996000	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr4:77993600-77996000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
9	chr4:77993600-77996000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr4:77993600-77996200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr4:77993600-77998200	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr4:77993600-77998400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:77993800-77995800	Flanking Active TSS	HUVEC	blood vessel
14	chr4:77993800-77995800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr4:77993800-77995800	Flanking Active TSS	NH-A	brain
16	chr4:77993800-77996000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:77993800-77996000	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr4:77993800-77996000	Flanking Active TSS	Osteobl	bone
19	chr4:77993800-77998600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:77994000-77996000	Flanking Active TSS	Primary hematopoietic stem cells	blood
21	chr4:77994000-77996000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
22	chr4:77994000-77997800	Active TSS	Ovary	ovary
23	chr4:77994000-77998000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:77994000-77998400	Active TSS	Aorta	Aorta
25	chr4:77994000-77998600	Active TSS	Brain Inferior Temporal Lobe	brain
26	chr4:77994200-77995800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
27	chr4:77994200-77995800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
28	chr4:77994200-77995800	Flanking Active TSS	Hela-S3	cervix
29	chr4:77994200-77996000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
30	chr4:77994200-77996000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr4:77994200-77996600	Active TSS	Right Atrium	heart
32	chr4:77994200-77998000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:77994200-77998000	Active TSS	Primary T helper cells PMA-I stimulated	--
34	chr4:77994200-77998000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:77994200-77998200	Active TSS	HSMMtube	muscle
36	chr4:77994200-77998200	Active TSS	NHDF-Ad	bronchial
37	chr4:77994400-77995800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr4:77994400-77995800	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr4:77994400-77996000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:77994400-77996000	Flanking Active TSS	Adipose Nuclei	Adipose
41	chr4:77994400-77996000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
42	chr4:77994400-77996000	Flanking Active TSS	Fetal Lung	lung
43	chr4:77994400-77996000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
44	chr4:77994400-77998000	Active TSS	Left Ventricle	heart
45	chr4:77994400-77998000	Active TSS	Right Ventricle	heart
46	chr4:77994400-77998200	Active TSS	Fetal Muscle Trunk	muscle
47	chr4:77994400-77998800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr4:77994400-77998800	Active TSS	Rectal Smooth Muscle	rectum
49	chr4:77994600-77995800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr4:77994600-77995800	Flanking Active TSS	A549	lung

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