Variant report

Variant	rs56133728
Chromosome Location	chr2:31444262-31444263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs55943828	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs56113729	1.00[ASN][1000 genomes]
rs56117659	1.00[ASN][1000 genomes]
rs56126114	0.83[ASN][1000 genomes]
rs72786911	1.00[ASN][1000 genomes]
rs72786913	1.00[ASN][1000 genomes]
rs72786918	1.00[ASN][1000 genomes]
rs72786920	1.00[ASN][1000 genomes]
rs72786923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72786926	1.00[ASN][1000 genomes]
rs72786929	1.00[ASN][1000 genomes]
rs72797144	1.00[ASN][1000 genomes]
rs72797147	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948552	chr2:31118599-31595424	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv430635	chr2:31420415-31464385	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1009712	chr2:31424588-31468364	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1000416	chr2:31424588-31470845	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv581268	chr2:31425783-31467079	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv1001299	chr2:31428030-31464385	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	nsv430646	chr2:31428030-31464385	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:31436800-31446200	Enhancers	Primary B cells from cord blood	blood
2	chr2:31436800-31447400	Enhancers	Primary hematopoietic stem cells	blood
3	chr2:31436800-31447400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr2:31441200-31449400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:31442400-31444400	Weak transcription	Fetal Heart	heart
6	chr2:31442600-31444400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:31442600-31444600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:31442600-31446400	Enhancers	Primary B cells from peripheral blood	blood
9	chr2:31442600-31447000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:31443000-31444400	Weak transcription	Fetal Thymus	thymus
11	chr2:31443000-31445400	Enhancers	GM12878-XiMat	blood
12	chr2:31443000-31446000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:31443400-31444400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr2:31443400-31449800	Weak transcription	Esophagus	oesophagus
15	chr2:31444200-31444400	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr2:31444200-31445000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr2:31444200-31446000	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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