Variant report

Variant	rs56133904
Chromosome Location	chr11:24397220-24397221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12789489	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34316884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34389475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34524890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35185647	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4578383	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55874295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55920369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107596	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055026	chr11:24151133-24737122	Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1037744	chr11:24174588-24737122	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv983217	chr11:24394261-24401348	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24396800-24398200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:24397000-24397400	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr11:24397000-24397400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:24397000-24397400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:24397200-24398000	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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