Variant report

Variant	rs561342223
Chromosome Location	chr6:35463102-35463103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35310116..35312027-chr6:35462385..35465150,2	MCF-7	breast:
2	chr6:35462442..35464169-chr6:35698121..35700196,2	MCF-7	breast:
3	chr6:35310114..35311915-chr6:35462651..35465491,3	MCF-7	breast:
4	chr6:35462682..35465009-chr6:35702407..35705389,2	K562	blood:
5	chr6:35418643..35423313-chr6:35462563..35468017,10	K562	blood:
6	chr6:35263661..35265616-chr6:35463054..35466039,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000157343	Chromatin interaction
ENSG00000112033	Chromatin interaction
ENSG00000023892	Chromatin interaction
ENSG00000232909	Chromatin interaction
ENSG00000112039	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
3	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
4	nsv602911	chr6:35457396-35465483	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	esv1843819	chr6:35457396-35465749	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	esv1851060	chr6:35457396-35465749	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	esv1794339	chr6:35457396-35465786	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv1800978	chr6:35457396-35465786	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	esv1803037	chr6:35457396-35465786	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
10	esv1837448	chr6:35457396-35465786	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
12	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
13	nsv602913	chr6:35457842-35465422	Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
14	esv3384067	chr6:35462874-35466272	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35455400-35463400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr6:35456200-35464400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:35457200-35463200	Enhancers	Ovary	ovary
4	chr6:35457200-35463400	Enhancers	Lung	lung
5	chr6:35457200-35463600	Enhancers	Pancreas	Pancrea
6	chr6:35458400-35463400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:35458400-35463800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:35458400-35463800	Weak transcription	Brain Angular Gyrus	brain
9	chr6:35458600-35463200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:35458600-35463400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:35458600-35463400	Enhancers	Left Ventricle	heart
12	chr6:35458600-35463800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:35458800-35463200	Enhancers	Fetal Intestine Large	intestine
14	chr6:35458800-35463200	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:35458800-35463400	Enhancers	Right Atrium	heart
16	chr6:35458800-35463600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr6:35458800-35463600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:35458800-35463800	Weak transcription	Brain Hippocampus Middle	brain
19	chr6:35459400-35463200	Enhancers	Primary hematopoietic stem cells	blood
20	chr6:35459400-35463200	Enhancers	Liver	Liver
21	chr6:35459400-35463200	Enhancers	Right Ventricle	heart
22	chr6:35460000-35463600	Weak transcription	A549	lung
23	chr6:35460400-35463200	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr6:35460400-35463600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
25	chr6:35460600-35463400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:35460600-35463800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
27	chr6:35460800-35463400	Weak transcription	K562	blood
28	chr6:35461000-35465000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr6:35461000-35465000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr6:35461200-35463400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:35461200-35463400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr6:35461200-35463800	Bivalent Enhancer	Fetal Thymus	thymus
33	chr6:35461600-35463200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:35461600-35463200	Bivalent Enhancer	Fetal Muscle Leg	muscle
35	chr6:35461600-35463400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr6:35461600-35463400	Enhancers	Adipose Nuclei	Adipose
37	chr6:35461600-35463400	Enhancers	Gastric	stomach
38	chr6:35461600-35463600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
39	chr6:35461600-35464000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr6:35461800-35463400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:35462000-35463200	Enhancers	HMEC	breast
42	chr6:35462000-35463600	Flanking Active TSS	Placenta	Placenta
43	chr6:35462000-35463600	Flanking Active TSS	HepG2	liver
44	chr6:35462000-35464000	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr6:35462000-35464000	Flanking Active TSS	HSMM	muscle
46	chr6:35462200-35463400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:35462200-35463600	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:35462200-35463800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:35462400-35463200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:35462400-35463200	Enhancers	HUES64 Cell Line	embryonic stem cell

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