Variant report

Variant	rs561342622
Chromosome Location	chr6:46602060-46602061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885868	chr6:46570856-46889314	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv348640	chr6:46601595-46607072	Weak transcription Flanking Active TSS Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:46580800-46619600	Weak transcription	Psoas Muscle	Psoas
2	chr6:46590400-46603000	Weak transcription	Fetal Stomach	stomach
3	chr6:46591200-46604400	Weak transcription	Fetal Lung	lung
4	chr6:46592200-46609200	Weak transcription	Ovary	ovary
5	chr6:46599800-46603400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:46600600-46610600	Weak transcription	Liver	Liver
7	chr6:46601400-46608000	Weak transcription	Aorta	Aorta
8	chr6:46602000-46602200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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