Variant report

Variant	rs56135055
Chromosome Location	chr11:108225223-108225224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs3218695	1.00[AMR][1000 genomes]
rs3218712	1.00[AMR][1000 genomes]
rs4987885	1.00[AMR][1000 genomes]
rs4987894	1.00[AMR][1000 genomes]
rs4987895	1.00[AMR][1000 genomes]
rs4987914	1.00[AMR][1000 genomes]
rs4987921	1.00[AMR][1000 genomes]
rs4987937	1.00[AMR][1000 genomes]
rs4987979	1.00[AMR][1000 genomes]
rs4988003	1.00[AMR][1000 genomes]
rs4988022	1.00[AMR][1000 genomes]
rs4988038	1.00[AMR][1000 genomes]
rs4988062	1.00[AMR][1000 genomes]
rs4988073	1.00[AMR][1000 genomes]
rs4988091	1.00[AMR][1000 genomes]
rs4988102	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898383	chr11:108068954-108251211	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv898384	chr11:108097333-108251211	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv832262	chr11:108123831-108309350	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv832263	chr11:108183372-108384391	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108094800-108244400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:108145800-108235400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:108148200-108225600	Weak transcription	Esophagus	oesophagus
4	chr11:108148600-108225600	Weak transcription	Gastric	stomach
5	chr11:108176400-108225400	Weak transcription	Right Ventricle	heart
6	chr11:108192200-108225400	Weak transcription	Brain Angular Gyrus	brain
7	chr11:108195400-108226200	Strong transcription	Primary T cells from cord blood	blood
8	chr11:108207000-108225400	Weak transcription	Fetal Kidney	kidney
9	chr11:108207400-108234000	Weak transcription	NHLF	lung
10	chr11:108209400-108225600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr11:108212000-108236000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:108212000-108236600	Weak transcription	Stomach Mucosa	stomach
13	chr11:108212200-108241400	Weak transcription	Hela-S3	cervix
14	chr11:108212600-108225400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:108212800-108238000	Weak transcription	HMEC	breast
16	chr11:108213400-108227800	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr11:108213400-108227800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr11:108213600-108227800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:108213600-108227800	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr11:108213600-108227800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr11:108213800-108228000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:108213800-108228000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:108214000-108227800	Strong transcription	Primary B cells from peripheral blood	blood
24	chr11:108214000-108227800	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr11:108214600-108227800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr11:108214800-108227800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr11:108215000-108227800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:108215600-108227600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:108215600-108228000	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr11:108216200-108226800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
31	chr11:108216200-108227800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:108216400-108227800	Strong transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:108216600-108227800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:108216600-108227800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr11:108216600-108227800	Strong transcription	Dnd41	blood
36	chr11:108217000-108227600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
37	chr11:108217200-108227800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr11:108217200-108227800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr11:108217200-108227800	Strong transcription	Primary T killer memory cells from peripheral blood	blood
40	chr11:108217200-108227800	Strong transcription	Liver	Liver
41	chr11:108217400-108227600	Strong transcription	GM12878-XiMat	blood
42	chr11:108217800-108227600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:108217800-108227800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:108218000-108226400	Strong transcription	HepG2	liver
45	chr11:108218000-108228400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:108218200-108227400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:108218200-108228000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr11:108218400-108227000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr11:108219200-108228200	Strong transcription	Fetal Muscle Leg	muscle
50	chr11:108219400-108227800	Strong transcription	Duodenum Smooth Muscle	Duodenum

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