Variant report

Variant	rs561351639
Chromosome Location	chr1:185191583-185191584
allele	-/TCT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv548398	chr1:185136458-186003094	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	esv1846729	chr1:185175837-185194885	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv946540	chr1:185191105-185200377	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185127400-185192000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:185127600-185218200	Weak transcription	Right Ventricle	heart
3	chr1:185128400-185193800	Weak transcription	Brain Angular Gyrus	brain
4	chr1:185128400-185201800	Weak transcription	Gastric	stomach
5	chr1:185134600-185193200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr1:185138000-185204000	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:185140000-185191600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr1:185148400-185193400	Weak transcription	Fetal Thymus	thymus
9	chr1:185151000-185193200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr1:185152200-185200800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:185153200-185191600	Weak transcription	Aorta	Aorta
12	chr1:185154400-185191600	Weak transcription	Ovary	ovary
13	chr1:185160000-185192600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr1:185160600-185191600	Weak transcription	Brain Germinal Matrix	brain
15	chr1:185160800-185192000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:185168000-185201800	Weak transcription	Primary T cells from cord blood	blood
17	chr1:185168400-185192200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:185170400-185192000	Weak transcription	Fetal Intestine Large	intestine
19	chr1:185170800-185191600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr1:185170800-185191600	Weak transcription	Fetal Intestine Small	intestine
21	chr1:185170800-185191600	Weak transcription	Fetal Muscle Leg	muscle
22	chr1:185170800-185192600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:185170800-185199800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:185170800-185218200	Weak transcription	Pancreas	Pancrea
25	chr1:185171400-185192000	Weak transcription	Fetal Brain Female	brain
26	chr1:185171400-185193200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:185174000-185207200	Weak transcription	NHDF-Ad	bronchial
28	chr1:185175600-185192000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:185175600-185217000	Weak transcription	Fetal Stomach	stomach
30	chr1:185177600-185192800	Weak transcription	Primary B cells from cord blood	blood
31	chr1:185177800-185202600	Weak transcription	Fetal Kidney	kidney
32	chr1:185178400-185208600	Weak transcription	Small Intestine	intestine
33	chr1:185178600-185191600	Weak transcription	Left Ventricle	heart
34	chr1:185180400-185191800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr1:185182400-185192200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:185183800-185199400	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:185184200-185192800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr1:185185200-185197800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:185185400-185194000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr1:185185600-185193400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:185186000-185193000	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:185186200-185194200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:185186800-185191600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr1:185188400-185197600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr1:185189000-185191600	Weak transcription	Brain Substantia Nigra	brain
46	chr1:185189400-185193000	Weak transcription	HSMMtube	muscle
47	chr1:185190000-185192800	Weak transcription	Esophagus	oesophagus
48	chr1:185190000-185193000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr1:185190200-185192000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr1:185190200-185192800	Strong transcription	Adipose Nuclei	Adipose

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