Variant report

Variant	rs561360009
Chromosome Location	chr15:35103067-35103068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-3	chr15:35102697-35105124	ENSG00000250007

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35100800-35108200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr15:35102000-35103600	Enhancers	HMEC	breast
3	chr15:35102000-35105600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:35102000-35105800	Enhancers	HSMMtube	muscle
5	chr15:35102000-35106400	Enhancers	HSMM	muscle
6	chr15:35102000-35106400	Enhancers	NHDF-Ad	bronchial
7	chr15:35102000-35106600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr15:35102000-35106600	Enhancers	Osteobl	bone
9	chr15:35102200-35103400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:35102200-35103400	Enhancers	Stomach Smooth Muscle	stomach
11	chr15:35102200-35103400	Enhancers	K562	blood
12	chr15:35102200-35104000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr15:35102200-35104000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:35102200-35104000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:35102200-35104200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:35102200-35106200	Enhancers	NHLF	lung
17	chr15:35102200-35106400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr15:35102400-35103600	Enhancers	A549	lung
19	chr15:35102600-35103200	Enhancers	Fetal Heart	heart
20	chr15:35102600-35103800	Enhancers	Fetal Muscle Leg	muscle
21	chr15:35102800-35103200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr15:35102800-35103200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:35102800-35103400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:35102800-35103600	Flanking Active TSS	Hela-S3	cervix
25	chr15:35102800-35104000	Enhancers	Placenta	Placenta
26	chr15:35102800-35106400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:35103000-35103400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr15:35103000-35103400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr15:35103000-35103400	Enhancers	Right Ventricle	heart
30	chr15:35103000-35103600	Enhancers	NH-A	brain
31	chr15:35103000-35104200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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