Variant report

Variant	rs56137037
Chromosome Location	chr2:179665279-179665280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179664555..179665445-chr2:179778727..179779258,2	MCF-7	breast:
2	chr2:179662340..179664242-chr2:179665023..179667760,3	K562	blood:
3	chr2:179664498..179665287-chr2:179884587..179885536,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11892300	1.00[EUR][1000 genomes]
rs13386726	1.00[EUR][1000 genomes]
rs55663050	1.00[AMR][1000 genomes]
rs55669553	1.00[AMR][1000 genomes]
rs55802460	1.00[AMR][1000 genomes]
rs55832587	1.00[AMR][1000 genomes]
rs55857742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55956577	1.00[AMR][1000 genomes]
rs55972547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56026369	1.00[AMR][1000 genomes]
rs56128843	1.00[EUR][1000 genomes]
rs56264840	1.00[AMR][1000 genomes]
rs56293906	1.00[AMR][1000 genomes]
rs56324602	1.00[AMR][1000 genomes]
rs56345408	1.00[AMR][1000 genomes]
rs56347248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834470	chr2:179555152-179728726	Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv934108	chr2:179556852-179729925	Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179533600-179669200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr2:179610800-179671400	Weak transcription	Ovary	ovary
3	chr2:179629600-179666200	Weak transcription	GM12878-XiMat	blood
4	chr2:179632400-179667800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:179639000-179672000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:179639400-179671400	Weak transcription	Gastric	stomach
7	chr2:179646000-179684800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr2:179647800-179672000	Weak transcription	Fetal Thymus	thymus
9	chr2:179648400-179667200	Weak transcription	HSMM	muscle
10	chr2:179655800-179670800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr2:179656200-179666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr2:179656200-179668400	Weak transcription	Fetal Intestine Small	intestine
13	chr2:179656400-179667600	Weak transcription	Adipose Nuclei	Adipose
14	chr2:179656800-179674400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr2:179657800-179668800	Weak transcription	Aorta	Aorta
16	chr2:179658200-179666800	Weak transcription	Psoas Muscle	Psoas
17	chr2:179659200-179671400	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr2:179659400-179698000	Weak transcription	Primary B cells from cord blood	blood
19	chr2:179659800-179671200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr2:179660000-179669200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:179662400-179669600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr2:179663200-179669400	Weak transcription	Fetal Intestine Large	intestine
23	chr2:179663600-179665600	Genic enhancers	Fetal Muscle Leg	muscle
24	chr2:179663800-179665400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:179663800-179666800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:179663800-179668600	Strong transcription	HSMMtube	muscle
27	chr2:179663800-179669800	Strong transcription	Primary T cells from cord blood	blood
28	chr2:179663800-179671200	Transcr. at gene 5' and 3'	Skeletal Muscle Female	skeletal muscle
29	chr2:179664000-179665600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr2:179664000-179666000	Genic enhancers	Fetal Heart	heart
31	chr2:179664200-179669600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr2:179664400-179665400	Strong transcription	Pancreas	Pancrea
33	chr2:179664600-179672000	Weak transcription	Thymus	Thymus
34	chr2:179664800-179665600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr2:179664800-179665600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr2:179664800-179670000	Transcr. at gene 5' and 3'	Skeletal Muscle Male	skeletal muscle
37	chr2:179664800-179673000	Active TSS	Right Atrium	heart
38	chr2:179665000-179665400	Transcr. at gene 5' and 3'	Left Ventricle	heart
39	chr2:179665000-179665600	Transcr. at gene 5' and 3'	Fetal Muscle Trunk	muscle
40	chr2:179665200-179665400	Active TSS	Right Ventricle	heart

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