Variant report

Variant	rs561378541
Chromosome Location	chr6:36695656-36695657
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36692850..36695107-chr6:36695196..36696719,2	MCF-7	breast:
2	chr6:36645663..36650199-chr6:36694521..36699153,6	MCF-7	breast:
3	chr6:36560896..36563675-chr6:36695597..36697920,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112081	Chromatin interaction
ENSG00000124762	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885810	chr6:36695223-36714491	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
2	chr6:36688400-36702200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:36689200-36702400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:36689800-36696600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:36690400-36696400	Weak transcription	Spleen	Spleen
6	chr6:36690400-36702600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:36692000-36696600	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:36692400-36697000	Enhancers	Primary B cells from cord blood	blood
9	chr6:36692600-36699000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:36693000-36696800	Enhancers	GM12878-XiMat	blood
11	chr6:36694000-36695800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:36694000-36703000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:36694400-36695800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:36694400-36697000	Enhancers	HSMM	muscle
15	chr6:36694400-36697200	Enhancers	HSMMtube	muscle
16	chr6:36694600-36696400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:36695000-36696400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr6:36695000-36696400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:36695000-36696400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr6:36695000-36696600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:36695000-36697200	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr6:36695200-36695800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr6:36695200-36695800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:36695200-36695800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:36695200-36696000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:36695200-36696000	Enhancers	NHEK	skin
27	chr6:36695200-36696200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:36695200-36696200	Enhancers	Thymus	Thymus
29	chr6:36695200-36696200	Enhancers	HMEC	breast
30	chr6:36695200-36696400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr6:36695200-36696400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:36695200-36696400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:36695200-36696600	Enhancers	Dnd41	blood
34	chr6:36695200-36696800	Enhancers	Primary T cells fromperipheralblood	blood
35	chr6:36695200-36697400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:36695400-36695800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:36695400-36695800	Enhancers	Gastric	stomach
38	chr6:36695400-36696000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr6:36695400-36696000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr6:36695400-36696000	Enhancers	Stomach Mucosa	stomach
41	chr6:36695400-36696200	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr6:36695400-36696400	Weak transcription	Lung	lung
43	chr6:36695400-36698800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr6:36695600-36696000	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:36695600-36697200	Enhancers	NHDF-Ad	bronchial
46	chr6:36695600-36697400	Enhancers	Monocytes-CD14+_RO01746	blood

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