The 2.0 version of rSNPBase

Variant report

Variant rs561385847
Chromosome Location chr5:5484459-5484460
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:5433400-5495200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr5:5458600-5495000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
3 chr5:5462400-5494600 Weak transcription Colonic Mucosa Colon
4 chr5:5463000-5493800 Weak transcription Fetal Heart heart
5 chr5:5465200-5493800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr5:5465200-5495000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr5:5467600-5488800 Weak transcription Brain Substantia Nigra brain
8 chr5:5468000-5494000 Weak transcription Fetal Brain Male brain
9 chr5:5470400-5492600 Weak transcription Colon Smooth Muscle Colon
10 chr5:5472800-5490600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
11 chr5:5475400-5487000 Weak transcription Placenta Amnion Placenta Amnion
12 chr5:5475400-5492400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
13 chr5:5475400-5494000 Weak transcription Fetal Intestine Small intestine
14 chr5:5475400-5495000 Weak transcription H9 Cell Line embryonic stem cell
15 chr5:5476000-5487200 Weak transcription HSMMtube muscle
16 chr5:5476000-5490000 Weak transcription Brain Inferior Temporal Lobe brain
17 chr5:5476000-5490800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
18 chr5:5476200-5488000 Weak transcription Primary hematopoietic stem cells blood
19 chr5:5476600-5484800 Weak transcription Primary B cells from cord blood blood
20 chr5:5476800-5486000 Weak transcription HMEC breast
21 chr5:5476800-5487000 Weak transcription Brain Anterior Caudate brain
22 chr5:5476800-5487000 Weak transcription Brain Cingulate Gyrus brain
23 chr5:5476800-5492600 Weak transcription A549 lung
24 chr5:5477000-5484800 Weak transcription Aorta Aorta
25 chr5:5477000-5484800 Weak transcription HUVEC blood vessel
26 chr5:5477000-5486200 Weak transcription Pancreas Pancrea
27 chr5:5477000-5486600 Weak transcription Brain Hippocampus Middle brain
28 chr5:5477000-5486800 Weak transcription Fetal Stomach stomach
29 chr5:5477000-5487000 Weak transcription Fetal Brain Female brain
30 chr5:5477000-5487200 Weak transcription Spleen Spleen
31 chr5:5477000-5487400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr5:5477000-5490800 Weak transcription Esophagus oesophagus
33 chr5:5477000-5492600 Weak transcription Rectal Smooth Muscle rectum
34 chr5:5477000-5494000 Weak transcription Psoas Muscle Psoas
35 chr5:5477000-5494200 Weak transcription Fetal Kidney kidney
36 chr5:5477000-5494400 Weak transcription Small Intestine intestine
37 chr5:5477000-5494400 Weak transcription NHLF lung
38 chr5:5477000-5494600 Weak transcription Right Ventricle heart
39 chr5:5477200-5486600 Weak transcription Fetal Thymus thymus
40 chr5:5477200-5493800 Weak transcription NHDF-Ad bronchial
41 chr5:5477200-5497600 Weak transcription Brain Angular Gyrus brain
42 chr5:5477400-5487800 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr5:5477600-5486800 Weak transcription Duodenum Mucosa Duodenum
44 chr5:5478200-5486000 Weak transcription Sigmoid Colon Sigmoid Colon
45 chr5:5478200-5486400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
46 chr5:5478200-5486800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr5:5478200-5487000 Weak transcription Duodenum Smooth Muscle Duodenum
48 chr5:5478200-5487200 Weak transcription Left Ventricle heart
49 chr5:5478400-5484800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr5:5478400-5484800 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015