Variant report

Variant	rs56143441
Chromosome Location	chr7:15978044-15978045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55938484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56281311	1.00[AFR][1000 genomes]
rs59276157	1.00[AMR][1000 genomes]
rs73680174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680537	1.00[AMR][1000 genomes]
rs73680538	1.00[AMR][1000 genomes]
rs73682507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15973600-15979600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr7:15975600-15978200	Enhancers	Rectal Smooth Muscle	rectum
3	chr7:15976800-15978200	Enhancers	Colon Smooth Muscle	Colon
4	chr7:15977200-15978200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:15977200-15978200	Enhancers	Osteobl	bone
6	chr7:15977800-15978200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr7:15977800-15978600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:15978000-15978400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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