Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13168764	1.00[ASN][1000 genomes]
rs13184352	1.00[ASN][1000 genomes]
rs28943880	1.00[ASN][1000 genomes]
rs33939197	1.00[ASN][1000 genomes]
rs34521671	0.96[EUR][1000 genomes]
rs34580109	0.89[EUR][1000 genomes]
rs34766974	0.95[EUR][1000 genomes]
rs34975809	1.00[ASN][1000 genomes]
rs35003055	1.00[ASN][1000 genomes]
rs35185573	1.00[ASN][1000 genomes]
rs35525634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35920615	1.00[ASN][1000 genomes]
rs4129472	1.00[ASN][1000 genomes]
rs4129645	1.00[ASN][1000 genomes]
rs66531739	0.89[EUR][1000 genomes]
rs67005744	1.00[ASN][1000 genomes]
rs67277863	1.00[ASN][1000 genomes]
rs67812331	1.00[ASN][1000 genomes]
rs6863381	1.00[ASN][1000 genomes]
rs6868132	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6883523	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9763260	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv1020464	chr5:42488628-42699394	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1018751	chr5:42491883-42697923	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42539800-42552000	Weak transcription	Ovary	ovary
2	chr5:42540800-42541000	ZNF genes & repeats	Aorta	Aorta

Quick Search: